Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1031
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 68 7e-12
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4) 28 6.8
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_48143| Best HMM Match : Sialidase (HMM E-Value=0.33) 28 9.0
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13) 28 9.0
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 28 9.0
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 100 bits (240), Expect = 1e-21
Identities = 40/68 (58%), Positives = 50/68 (73%)
Frame = -2
Query: 735 EKSTCCVSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 556
E C ++G ++GL G HGFH+H +GD TNGC SAG HFNP K++HGGPS RHVGDL
Sbjct: 24 EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83
Query: 555 GNIEAIED 532
GN+ A +D
Sbjct: 84 GNVVAGDD 91
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/53 (64%), Positives = 46/53 (86%)
Frame = -1
Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAK 347
D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR+ACGVIG+ +
Sbjct: 100 DALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGITQ 152
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 68.1 bits (159), Expect = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 472 IIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 359
IIGR +VVHAD DDLG GGHELSK+TGN+G R+ CG+I
Sbjct: 30 IIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -2
Query: 597 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 508
HG P RH+GDLGNIEA + +G+ VSI
Sbjct: 2 HGAPEDKDRHLGDLGNIEA-DANGIADVSI 30
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 648 TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVT-KVSIKIPRS 493
T+ +SA HF+ DH P S V D+ +E+ + + ++S+K RS
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSEGPTSGELSLKGHRS 3257
>SB_34157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 359 NDSTSNTATGITSGLT*LMATESQVIRVSMDN*SATNDAVRSMKRDLGILIDTLVTPESS 538
N T + + S L + +QV +S +T D + +RDL ++ +T T +
Sbjct: 50 NRQTGKNSANLESSWAYLGTSSAQVGNISAQLRKSTQDIIEERRRDLQLMRETWFTSGLN 109
Query: 539 IASMLPRSP 565
P+SP
Sbjct: 110 SDINCPQSP 118
>SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)
Length = 197
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 60 YINACTKDNVKPKIAILHNFRNAIKNNFITSYRL 161
Y AC ++ I HNF AIKN+ + +Y L
Sbjct: 97 YTGACAGNDDAALNQIRHNFLEAIKNSHLANYAL 130
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 42 NKYTLRYINACTKDNVKPKIAILHNFRNAIKNNFITSYRLTYYYN*LCLHLFTIRWTNIT 221
N +T I CT + +KP+ LH+ + N + R N L I+W T
Sbjct: 257 NHHTFINIALCT-NRIKPQYLYLHSLVYQVSNKAAPNQRYPTILNKTVFRLLNIKWGPYT 315
Query: 222 V 224
+
Sbjct: 316 I 316
>SB_48143| Best HMM Match : Sialidase (HMM E-Value=0.33)
Length = 317
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 143 KIIFNSIPEVMQYCNLWLHIILGAGVYVSQ 54
+IIFN EV+ N+W H+ AGVY S+
Sbjct: 149 RIIFNVTTEVIVPANVWTHV---AGVYDSK 175
>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
Length = 661
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 396 LVMPVAVLLVESLAWPRFKYIHFSYVGLGTTIFSD 292
+++ +A L VE W F+ I+F ++ L T F D
Sbjct: 366 MLLVLAALAVEYEGWTYFQGIYFGFITLSTIGFGD 400
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 548 LRQLKTLESLKYQSRFPDLSSWT*QHHWSHFS 453
L+QLK L+ L+Y + ++W+ ++WS ++
Sbjct: 283 LQQLKHLQQLEYPQQLDTHNNWSTHNNWSTYN 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,683,459
Number of Sequences: 59808
Number of extensions: 472180
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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