Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1031
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    94   1e-19
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    92   3e-19
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    92   3e-19
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    45   5e-05
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont...    32   0.34 
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    31   1.0  
At1g75020.2 68414.m08712 phospholipid/glycerol acyltransferase f...    29   3.2  
At1g75020.1 68414.m08711 phospholipid/glycerol acyltransferase f...    29   3.2  
At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein si...    29   4.2  
At5g18330.1 68418.m02157 U-box domain-containing protein weak si...    29   4.2  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    29   4.2  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   5.6  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   5.6  
At4g04920.1 68417.m00715 expressed protein                             28   5.6  
At3g55100.1 68416.m06119 ABC transporter family protein ATP-bind...    28   5.6  
At1g58350.1 68414.m06637 expressed protein contains Pfam profile...    28   5.6  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    28   7.4  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/70 (58%), Positives = 46/70 (65%)
 Frame = -2

Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
           V+  + GLT G HGFH+HEFGDTTNGC S G HFNP    HG P    RH GDLGNI A 
Sbjct: 93  VNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINAN 152

Query: 537 EDSGVTKVSI 508
            D GV + +I
Sbjct: 153 AD-GVAETTI 161



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = -1

Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 344
           D+QI L GPNS++GR  VVH   DDLG GGHELS TTGNAGGR+ACGVIGL  +
Sbjct: 163 DNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 41/74 (55%), Positives = 51/74 (68%)
 Frame = -2

Query: 726 TCCVSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNI 547
           T  V+G++ GL+ G HGFH+H FGDTTNGC S G HFNP  + HG P+   RH GDLGNI
Sbjct: 33  TTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGNI 92

Query: 546 EAIEDSGVTKVSIK 505
            A   +GV ++ IK
Sbjct: 93  LA-GSNGVAEILIK 105



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 35/52 (67%), Positives = 42/52 (80%)
 Frame = -1

Query: 508 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 353
           +D  I L G  SI+GR +VVHADPDDLG GGH+LSK+TGNAG R+ CG+IGL
Sbjct: 105 KDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/66 (60%), Positives = 43/66 (65%)
 Frame = -2

Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
           VSG V GL  G HGFHVH  GDTTNGC S G HFNP+ + HG P  A RH GDLGNI   
Sbjct: 30  VSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVG 89

Query: 537 EDSGVT 520
           +D   T
Sbjct: 90  DDGTAT 95



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = -1

Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 353
           D QI L GPNSI+GR +VVHADPDDLG GGHELS  TGNAGGR+ACG+IGL
Sbjct: 100 DCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -2

Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 541
           +     GL+ G H + ++E+GD TNG  S G+ +NP  QD  G       +GDLG +EA
Sbjct: 123 IEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNP-FQDQTG----TEPLGDLGTLEA 176


>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
           contains Pfam PF01876: RNase P subunit p30
          Length = 581

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 636 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVS 511
           TS G   +P K DHG P S V  V ++GN    E++ V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 481 PNSIIGRTLVVHADPDDLGLGGHELSKT 398
           P +++  TLV H+DP D+GLG  + S +
Sbjct: 3   PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30


>At1g75020.2 68414.m08712 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           Acyltransferase
          Length = 378

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 106 IAIFGFTLSLVQAFMYLSVYLFSCFVI 26
           IA F   +SL   F+YL++Y  SCF +
Sbjct: 318 IATFAGVISLTVVFIYLTLYSHSCFKV 344


>At1g75020.1 68414.m08711 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           Acyltransferase
          Length = 378

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 106 IAIFGFTLSLVQAFMYLSVYLFSCFVI 26
           IA F   +SL   F+YL++Y  SCF +
Sbjct: 318 IATFAGVISLTVVFIYLTLYSHSCFKV 344


>At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 506

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 317 PTYEKCMYLNLGQANDSTSNTATGITS 397
           P+Y+KC+Y+  G  N + +  AT +TS
Sbjct: 446 PSYDKCIYITAG-GNKTKATNATALTS 471


>At5g18330.1 68418.m02157 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 445

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 626 ELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSRFP 498
           E I TL NKIM+ P+L+    A+  T  +   LE LK++   P
Sbjct: 68  EFICTLSNKIMIEPMLI----ASGQTFEKSYILEWLKHERTCP 106


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 454 VVHADPDDLGLGGHELSKTTGNAGGRIACGVI 359
           + H   +DL L    LSKTTG+AG R   G++
Sbjct: 270 ITHPVDEDLSL--FSLSKTTGHAGSRFGWGLV 299


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 672 HVHEFG---DTTNGCTSAGAHFNPEKQDHGGPSSAV 574
           H  EFG   DTT+GC S  + F+ E   + G S A+
Sbjct: 53  HFPEFGPDYDTTDGCISRTSSFHMEPVKNNGHSRAI 88


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 672 HVHEFG---DTTNGCTSAGAHFNPEKQDHGGPSSAV 574
           H  EFG   DTT+GC S  + F+ E   + G S A+
Sbjct: 53  HFPEFGPDYDTTDGCISRTSSFHMEPVKNNGHSRAI 88


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 326  EKCMYLNLGQANDSTSNTATGITSGLT*LMA-TESQVIRVSMDN*SATNDA 475
            +K +YL +GQ   +T+ TAT  +SG + + A  +  + ++S  N  + + A
Sbjct: 867  DKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDGSNSTA 917


>At3g55100.1 68416.m06119 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 662

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 365 SHWLGQDLNTYIFHML-GLVLQYLVTS*YFEY*FLFKFTYINK 240
           S W G    T++  ++  +++ Y+VT  Y  Y  LF   Y+N+
Sbjct: 496 SFWSGCSFVTFVSGVIPNVMMSYMVTFGYLSYCLLFSGFYVNR 538


>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           supporting cDNA gi|6520166|dbj|AB028199.1|
          Length = 794

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 368 WSHWLGQDLNTYIFHMLGLVLQYL 297
           W H L +D  + IFH+LG  L YL
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYL 350


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -3

Query: 377 YCLWSH---WLGQDLNTYIFHML-GLVLQYLVTS*YFEY*FLFKFTYINK 240
           YCL  +   W G  + T+I  ++  +++ Y+VT  Y  Y  L    YIN+
Sbjct: 535 YCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTIAYLSYCLLLGGFYINR 584


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,705
Number of Sequences: 28952
Number of extensions: 330455
Number of successful extensions: 808
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)