Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1023
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050... 32 0.53
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.1
12_02_0423 + 18944555-18945226,18945309-18945545 29 2.8
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 29 2.8
05_01_0565 - 4926137-4926847,4926928-4927257 29 3.7
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 29 4.9
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 28 6.5
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 28 8.6
12_01_0394 - 3105306-3106596,3107815-3107861 28 8.6
>02_02_0548 -
11403442-11404205,11404520-11404811,11404917-11405016,
11405049-11405458
Length = 521
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 201 QEAYCQEQKIRKEPSPCLVVEWIDENKELEW-ESTFSTSRQHESFRHVTELF 353
++ + + I KE SP ++WI+EN + W STFSTS+ ++ E F
Sbjct: 318 KDVFDRHFNIMKEASP-RSMQWIEENHQHLWARSTFSTSKCDYVTNNIAETF 368
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 660 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 559
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 487 GESDCLIKQSIAMALAGVDAM*FLPSALNVNVKKFKQA 600
GE CL+ S+ A+A DAM AL+ +V +FK +
Sbjct: 258 GEGRCLVPTSLVRAIADDDAMATSNPALSRDVNRFKDS 295
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 617 LPP-FTRACLNFFTLTFRALGRNHIASTPARAIAMLCLIRQSDSPCP 480
LPP F+ ++F T R + R H+ P R +A++CL+ S+ P P
Sbjct: 59 LPPSFSSVTMDF--ATDRDIQREHLKDLPRRDLAIICLM-NSNPPIP 102
>05_01_0565 - 4926137-4926847,4926928-4927257
Length = 346
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 291 WESTFSTSRQHESFRHVTELFRHIKRYFSFRGS 389
+E+TF+ + H FR E++ + RY + GS
Sbjct: 58 FETTFTVDQVHRHFRRFKEVWNIVARYMNMSGS 90
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 213 CQEQKIRKEPSPCLVVEWIDENKELEWESTFSTSRQHESFRHVTE 347
C++ I P LV EW ++N E E + T + S + TE
Sbjct: 846 CRQDSIMISEYPSLVEEWTNDNLENEMDIVLDTVNKIRSLKTRTE 890
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 523 SQCFV*LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 401
+ C LD+ IP+ R E + E R I+P + P+ P
Sbjct: 268 ADCSPGLDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +1
Query: 391 PSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCLIKQSIAMALAGVDAM*FLPSAL 570
P VVS+S RAR AR + +A E L+ Q + +A+A + LP L
Sbjct: 70 PRPAVVSMSERARLARVAAAGARHAAVPALRLDEHQVLLLQQL-LAVAAAPLLQGLPPLL 128
Query: 571 NVNVKKFKQARVNGGSNYDSLKVAK 645
+ ++ + V GG ++ + K
Sbjct: 129 DAR-RRVRNVPVGGGCRRNTKRSTK 152
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 158 TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPCCRM-DRRKQRAGMG 295
T N +S + P L SKG +S+P R +RRK+ A G
Sbjct: 115 TTNTSSKLSKVLTSPPSRLPMLSPSKGVRSVPSTRREERRKEEATQG 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,949,125
Number of Sequences: 37544
Number of extensions: 428646
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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