Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1023
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    30   1.4  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 195 GSQEAYCQEQKIRKEPSPCLVVEWIDENKELEWESTFSTSRQHESFRHVTE 347
           GSQ+   +E +IRK+ SP    E + E+++ EW+       + E  R   E
Sbjct: 616 GSQKKRRKEDRIRKDRSP--TPEDVIESRDAEWQERLRLKMEREKSRKADE 664


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = +1

Query: 4   LWILRMQN----SSVYLNL---IFWNNIRLCVIRRNIEFVREPFTLVVNENILEIHV 153
           +W+ R+ N    S +YL+L     WNN  +C  RRN+ ++    T +++ N   +HV
Sbjct: 377 VWLQRIVNQFSGSFLYLDLDVNSIWNNQIMCTNRRNL-YISTSCTELLSVNCTHLHV 432


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 401 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPTV*LNKALRWPSRVLTQCDFCPVL 568
           ++ R +F +  H  + PP  G++R   D GN        + W  +V++  DF  +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGND-------MDWCMQVISSDDFREIL 459


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 64  IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 189
           I L ++   + ++RE    V+NE IL++ + N+   I NG +
Sbjct: 39  IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80


>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
           protein F56C9.10b protein.
          Length = 1031

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 171 HQQRGDPEGSQEAYCQEQKIRKEPSPCLVVEWIDENKELEWESTFST 311
           HQQ   P+   E    E  I+K+P P ++ E +++N+E + E    T
Sbjct: 26  HQQT-QPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKVEET 71


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
           protein F56C9.10a protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 171 HQQRGDPEGSQEAYCQEQKIRKEPSPCLVVEWIDENKELEWESTFST 311
           HQQ   P+   E    E  I+K+P P ++ E +++N+E + E    T
Sbjct: 26  HQQT-QPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKVEET 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,686
Number of Sequences: 27780
Number of extensions: 370206
Number of successful extensions: 851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)