Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1023
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.58 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   1.0  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    29   3.1  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.1  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.1  
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.4  
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont...    28   7.2  
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti...    27   9.5  
At1g65560.1 68414.m07437 allyl alcohol dehydrogenase, putative s...    27   9.5  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 185 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 42
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 228 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 130
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 341 NRTLPTYQKVLFLP-RIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 475
           N T  T    L +  R++L+      R+  D HD +  PFNG   T
Sbjct: 177 NNTYVTQSGSLMMSFRVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 624 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 514
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 624 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 514
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase; similar
           to UDP-glucose glucosyltransferase GI:3928543 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 560 GRNHIASTPARAIAMLCLIRQSDSPCPCQF*ADR*TAVVQNRADRARNETDTTLR-LGRS 384
           G N    + A  + M+C    S+ P  C+F  D     ++   D  R E +T +R L   
Sbjct: 383 GWNSTLESLAGGVPMICWPCFSEQPTNCKFCCDEWGVGIEIGKDVKREEVETVVRELMDG 442

Query: 383 AEGKVPFDMSEEF 345
            +GK   + +EE+
Sbjct: 443 EKGKKLREKAEEW 455


>At2g17440.1 68415.m02012 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeats
          Length = 526

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 455 TAVVQNRADRARNETDTTLRLGRSAEGKVPFDMSEEFCYMPKRLMLPRGTE 303
           T+++QN     RN  +   +L +++  +VP ++   F  M K L+  + TE
Sbjct: 31  TSLIQNVEKEDRNRLEAIDKLVKTSSSEVPLELFNVFKEMKKSLVRFQSTE 81


>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 712

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 617 LPPFTR-ACLNFFTLTFRALG---RNHIASTPARAIAMLCLIRQS 495
           +P F+R A L  F + F +LG   R +  S  AR I ++CL+R S
Sbjct: 15  VPLFSRLALLPTFGVPFSSLGATTRLNCTSRKARRICVMCLVRDS 59


>At1g65560.1 68414.m07437 allyl alcohol dehydrogenase, putative
           similar to allyl alcohol dehydrogenase from Nicotiana
           tabacum [gi:6692816]; similar to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 350

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 449 VVQNRADRARNETDTTLRLGRSAEGKVPFDMSEEFCYMPKRLML 318
           +++N  D    ETD  ++LG + E K P   S   C++ K L L
Sbjct: 13  ILKNYVDGIPTETDMEVKLGETIELKAPKGSS---CFLVKNLYL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,382
Number of Sequences: 28952
Number of extensions: 342964
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)