Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1022
         (734 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    27   0.79 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   1.8  
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    25   3.2  
EF519475-2|ABP73560.1|  177|Anopheles gambiae CTL4 protein.            24   5.6  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           23   9.8  
EF519368-1|ABP68477.1|  506|Anopheles gambiae LRIM1 protein.           23   9.8  
DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       23   9.8  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +3

Query: 78  RTLDVRSGRMKL-SSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEV 239
           RT  V +G  ++  SY +D    + T E    +SV  G     +LGP  W TM  G +++
Sbjct: 588 RTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDI 647

Query: 240 RGNPDED 260
              PD +
Sbjct: 648 ALPPDAE 654


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 729 TLQRHPFSGLVASAGESCTLLSGFRLPWPPSCCHERPTPFMV 604
           T+   P  G++     +  LL G   P PP     RP P MV
Sbjct: 82  TMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMMV 123


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 307 PYTQFRRSICTSESLRSSSGFP 242
           P+T F RSIC  E    SS  P
Sbjct: 260 PFTDFLRSICLPEQNFESSATP 281


>EF519475-2|ABP73560.1|  177|Anopheles gambiae CTL4 protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -3

Query: 681 SCTLLSGFRLPWPPSCCHERPTPFMVSH 598
           SC  + G  + W  + C + P  F+  +
Sbjct: 150 SCVYIQGSTMSWVATSCDDEPRQFICEY 177


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 732 KTLQRHPFSGLVASAGESCTLLSGFRLPWPPSCCHERPTPF 610
           +T+ +     L     E CT+       + P CC + P PF
Sbjct: 287 QTVAKQTVKKLTGQNEEECTV--PMHNHYGPYCCEDLPAPF 325


>EF519368-1|ABP68477.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 732 KTLQRHPFSGLVASAGESCTLLSGFRLPWPPSCCHERPTPF 610
           +T+ +     L     E CT+       + P CC + P PF
Sbjct: 287 QTVAKQTVKKLTGQNEEECTV--PMHNHYGPYCCEDLPAPF 325


>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 223 LVRSKSGETLMRTVAILTCKSIVGTGYRGERLIEPSSSWFRPKFPSG 363
           +VR  +    MRT  ++     +G   +  ++I+ S+  FRP F SG
Sbjct: 151 VVRRANHFLSMRTNGLIRDTLFLGDVPKQLQMIQLSAGSFRPPFASG 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,943
Number of Sequences: 2352
Number of extensions: 16293
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)