Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1013
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.81 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.81 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   1.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   2.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   7.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   7.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   7.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   7.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   7.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    20   7.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   7.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   7.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 216 NFQGPQRVSGHRRKC 172
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 88 PDLSAASSGHFGLPRRTLVFKDEG 17
          P +S++     G      VFKDEG
Sbjct: 2  PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 216 NFQGPQRVSGHRRKC 172
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 134 RIPWNSNAQAEKKTLPGPLG 75
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -2

Query: 229 HPSPEFSRSAESIRTPPQMRCSSRSE-----PYLPSIGFH 125
           HP    S+ + +   PPQ+  + R E     P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 320 SFPYIILSTGGSSP 279
           S PY ++S G SSP
Sbjct: 125 SHPYTVISNGYSSP 138


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 258 GSNRRDISTYIPHLNFQGPQRVS 190
           G  R D  T+ PH     PQ+ S
Sbjct: 339 GIERADSVTWNPHKLLTAPQQCS 361


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 103 LSVSTSPPGKPATSTASQNLSSPASS 128


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 302 LSTGGSSPWRPAADMGRTGATSPRTS 225
           LS   S P +PA        +SP +S
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,884
Number of Sequences: 336
Number of extensions: 1662
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)