Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1013
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 0.28
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 30 0.37
07_03_0630 - 20097672-20097772,20097983-20102012 29 0.65
03_05_0565 + 25667391-25667696 27 2.6
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 27 3.5
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 3.5
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 27 4.6
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 27 4.6
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 4.6
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 26 6.1
11_05_0087 + 18970741-18972702 26 6.1
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 26 6.1
01_06_0456 + 29521282-29522064 26 6.1
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 26 8.0
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 128 PWNSNAQAEKKTLPGPLGGVFRP 60
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 30.3 bits (65), Expect = 0.37
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 226 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 68
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 67 SGHFGLPRRTLVFKDEGTL 11
HF LVF G +
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 29.5 bits (63), Expect = 0.65
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -2
Query: 259 WVEPARHLHVHPSPEFSRSAESIRTPPQMRCS-SRSEPYLPSIGFHGTRTLRQKRKLFPD 83
W + A + HP E S E IR P + R+ +P +G G + +F D
Sbjct: 223 WTQQAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPAVIPIVGISGVGKSALAKFIFDD 282
Query: 82 LSAASSGHFG 53
+ HFG
Sbjct: 283 ANVRE--HFG 290
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 265 RIWVEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 119
RI++ A H H SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 163 KSTAFAAVSGYSLRTLKIQVRDVRGDVAPVRPISAAGLQGEEPPVD 300
++ + +A S S R + + + A +RP+ ++ GE PP D
Sbjct: 554 RNVSASAASSQSRRDFLLLIPSLAAASAILRPLPSSAADGEAPPTD 599
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 226 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 134
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -2
Query: 316 FPTLSYRLEALPLGDLLRIWVEPARHLHV----HPSPEFSRSAESIRTPPQMRCSSRSEP 149
F Y LEA+ DL I V RH +P+PE + +PP + SS + P
Sbjct: 352 FEPSRYNLEAISQSDL-PISVSGRRHNSSSNSNNPAPEAGGQITLMSSPPISQQSSSAPP 410
Query: 148 YL 143
YL
Sbjct: 411 YL 412
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 273 TCCGYGSNRRDISTYIPHLNFQGP 202
+CCG+ +PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 256 VEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 134
V P+ H P P+ S R PP R S RSE P +
Sbjct: 29 VTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -2
Query: 277 GDLLRIWVEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 119
G+ +R W P + V SP + PP + + E L G+HGT
Sbjct: 18 GEKVRRWTRPKKG-SVSRSPHYPCPGGEEEPPPPLAPGTDVEVRLDGDGYHGT 69
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 114 VRVPWNPIEGRYGSEREEHR 173
VR P P+ GR+G RE R
Sbjct: 56 VRAPRRPLHGRHGHHREHRR 75
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 199 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 101
+S R P R ++PYLPS G R LR+K
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREK 237
>01_06_0456 + 29521282-29522064
Length = 260
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 115 TLRQKRKLFPDLSAASSGHFGLPRRTL 35
TLR+ ++FP +S++ G FG+ R L
Sbjct: 171 TLRRHHQVFPHISSSCQGCFGVRRYIL 197
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 139 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDE 20
S G H L K+ L+AASSG LP VF ++
Sbjct: 22 SRGCHHVNVLPMSGKIMLPLTAASSGSVALPCDAPVFTEK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,292
Number of Sequences: 37544
Number of extensions: 217735
Number of successful extensions: 810
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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