Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1013
(326 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF179181-1|ABN05284.1| 727|Homo sapiens LIM domain binding 3 pr... 31 0.83
AF276807-1|AAQ14316.1| 330|Homo sapiens Z-band alternatively sp... 31 0.83
AB014513-1|BAA31588.1| 734|Homo sapiens KIAA0613 protein protein. 31 0.83
BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein LO... 31 1.1
BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein LO... 31 1.1
AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein. 31 1.1
AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein. 31 1.1
AM408124-1|CAL59670.1| 130|Homo sapiens T cell receptor delta c... 29 3.3
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 29 4.4
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 29 4.4
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 29 4.4
AK057456-1|BAB71495.1| 166|Homo sapiens protein ( Homo sapiens ... 28 5.8
AF169196-1|AAG43399.1| 303|Homo sapiens tight junction protein ... 28 5.8
U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2... 28 7.7
M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein p... 28 7.7
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 28 7.7
BC114371-1|AAI14372.1| 714|Homo sapiens FERM domain containing ... 28 7.7
AL109749-2|CAI42080.1| 594|Homo sapiens novel protein protein. 28 7.7
AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens ... 28 7.7
AK125336-1|BAC86135.1| 714|Homo sapiens protein ( Homo sapiens ... 28 7.7
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 28 7.7
AC016689-1|AAX88865.1| 571|Homo sapiens unknown protein. 28 7.7
AB209476-1|BAD92713.1| 1264|Homo sapiens importin 4 variant prot... 28 7.7
>EF179181-1|ABN05284.1| 727|Homo sapiens LIM domain binding 3
protein.
Length = 727
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -2
Query: 250 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 71
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220
Query: 70 SSGHFGLPRRTLVFKD 23
+ GLP +L KD
Sbjct: 221 KASGVGLPGGSLPIKD 236
>AF276807-1|AAQ14316.1| 330|Homo sapiens Z-band alternatively
spliced PDZ-motif protein ZASP-4 protein.
Length = 330
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -2
Query: 250 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 71
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220
Query: 70 SSGHFGLPRRTLVFKD 23
+ GLP +L KD
Sbjct: 221 KASGVGLPGGSLPIKD 236
>AB014513-1|BAA31588.1| 734|Homo sapiens KIAA0613 protein protein.
Length = 734
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -2
Query: 250 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 71
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 171 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 227
Query: 70 SSGHFGLPRRTLVFKD 23
+ GLP +L KD
Sbjct: 228 KASGVGLPGGSLPIKD 243
>BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 111 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 242
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 111 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 242
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein.
Length = 587
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 111 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 242
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein.
Length = 423
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 111 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 242
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AM408124-1|CAL59670.1| 130|Homo sapiens T cell receptor delta
chain protein.
Length = 130
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 319 PFPTLSYRLEALPLGDLLRIWVEPARHLHVHPS 221
PFPTL+ + L G R+ VEP H PS
Sbjct: 97 PFPTLAAYTDKLIFGKGTRVTVEPRSQPHTKPS 129
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 232 RGDVAPVRPISAAGLQGEEPPVDRIM*G 315
+GDV P P A G+QGE P ++ G
Sbjct: 1556 KGDVGPAGPRGATGVQGERGPPGLVLPG 1583
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 232 RGDVAPVRPISAAGLQGEEPPVDRIM*G 315
+GDV P P A G+QGE P ++ G
Sbjct: 1556 KGDVGPAGPRGATGVQGERGPPGLVLPG 1583
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 232 RGDVAPVRPISAAGLQGEEPPVDRIM*G 315
+GDV P P A G+QGE P ++ G
Sbjct: 195 KGDVGPAGPRGATGVQGERGPPGLVLPG 222
>AK057456-1|BAB71495.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ32894 fis, clone TESTI2004994. ).
Length = 166
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 158 FRTISPFYRIPWNSNAQAEKKTLPGP 81
F + SP +R+PW S A A LP P
Sbjct: 105 FFSSSPSHRVPWGSCASASAPRLPVP 130
>AF169196-1|AAG43399.1| 303|Homo sapiens tight junction protein
ZO-1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 226 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPD 83
PSP +S A+S+RTP PS+ H T ++ +P+
Sbjct: 120 PSPSYSPQADSLRTPSTEAAHIMLRDQEPSLSSHVDPTKVYRKDPYPE 167
>U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2
protein.
Length = 366
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 114 VRVPWNPIEGRYGSERE--EHRICGGVRILSADLENSGEGCTW 236
+RV P++ R G+E E + GV L N G GCTW
Sbjct: 223 LRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGLRNRGPGCTW 265
>M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein
protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 114 VRVPWNPIEGRYGSERE--EHRICGGVRILSADLENSGEGCTW 236
+RV P++ R G+E E + GV L N G GCTW
Sbjct: 202 LRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGLRNRGPGCTW 244
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 223 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 65
S + SRS E++ P+ R S S PY PS + + Q R + +S A S
Sbjct: 1342 SSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRSMDSSMSMADS 1391
>BC114371-1|AAI14372.1| 714|Homo sapiens FERM domain containing 7
protein.
Length = 714
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 128 PWNSNAQAEKKTLPGPLGGVFRPLWVTPS 42
P S +Q++ KT+ P G FRPL P+
Sbjct: 587 PKRSQSQSDMKTIRFPFGSEFRPLGPCPA 615
>AL109749-2|CAI42080.1| 594|Homo sapiens novel protein protein.
Length = 594
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 128 PWNSNAQAEKKTLPGPLGGVFRPLWVTPS 42
P S +Q++ KT+ P G FRPL P+
Sbjct: 467 PKRSQSQSDMKTIRFPFGSEFRPLGPCPA 495
>AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ45784 fis, clone NETRP2006468. ).
Length = 401
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 223 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 65
S + SRS E++ P+ R S S PY PS + + Q R + +S A S
Sbjct: 328 SSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRSMDSSMSMADS 377
>AK125336-1|BAC86135.1| 714|Homo sapiens protein ( Homo sapiens
cDNA FLJ43346 fis, clone NT2RI3008652, moderately
similar to Homo sapiens mRNA for CDEP. ).
Length = 714
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 128 PWNSNAQAEKKTLPGPLGGVFRPLWVTPS 42
P S +Q++ KT+ P G FRPL P+
Sbjct: 587 PKRSQSQSDMKTIRFPFGSEFRPLGPCPA 615
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens cDNA
FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 223 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 65
S + SRS E++ P+ R S S PY PS + + Q R + +S A S
Sbjct: 1095 SSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRSMDSSMSMADS 1144
>AC016689-1|AAX88865.1| 571|Homo sapiens unknown protein.
Length = 571
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -2
Query: 232 VHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 53
+HP PE + S PQ S + P+L GF + + + P S +SG F
Sbjct: 249 LHPRPESYSTGHSPIMIPQHPSQSGTFPFLHKAGF--SSSYKNSGCFIPPQSELTSGLFE 306
Query: 52 LPRRTLVFKDE 20
++F+DE
Sbjct: 307 DEDFAVLFQDE 317
>AB209476-1|BAD92713.1| 1264|Homo sapiens importin 4 variant
protein.
Length = 1264
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 220 PEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 128
P + +A S +P Q+ S R EP LP GF
Sbjct: 89 PSWPLNARSSSSPTQLGNSRRGEPTLPESGF 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,400,706
Number of Sequences: 237096
Number of extensions: 1133391
Number of successful extensions: 7563
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7563
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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