Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1013
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 2.4
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 3.2
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 3.2
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 27 3.2
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical ... 26 5.6
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 26 5.6
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 26 5.6
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein. 26 7.4
U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical pr... 26 7.4
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 26 7.4
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 26 7.4
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 26 7.4
Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical pr... 25 9.7
U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone... 25 9.7
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 25 9.7
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 25 9.7
AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear recep... 25 9.7
AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear recep... 25 9.7
AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched rela... 25 9.7
>L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical
protein F54F2.7 protein.
Length = 157
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +3
Query: 144 RYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSTHI 263
++G++R +++ G + + L+ + CT++C+ GS H+
Sbjct: 57 KHGADRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHV 96
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 209 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 81
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 193 IRTPPQMRCSSRSEPYLPSIGFHGT 119
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 157 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTLIE 5
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 214 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 113
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 265 RIWVEPARHLHVHPSPEFSRSAES 194
R+W P R LH +PS ++ RS ++
Sbjct: 168 RLWKTPMRLLHPNPSIQYVRSGQN 191
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 229 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 125
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 238 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 273
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 229 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 125
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 224 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 259
>AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical
protein T08E11.1 protein.
Length = 649
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 85 DLSAASSGHFGLPRRTLVFKDEGTLIE 5
DL HF L + T FK+E TL+E
Sbjct: 31 DLVLDFENHFKLSKVTYTFKEEDTLVE 57
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 229 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 125
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 238 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 273
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 174 ICGGVRILSADLENSGEGC 230
+CGG+ +L +DL++ GC
Sbjct: 825 VCGGLALLGSDLDSVSMGC 843
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 122 NSNAQAEKKTLP 87
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein.
Length = 722
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 122 NSNAQAEKKTLP 87
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical
protein R13A1.3 protein.
Length = 430
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 129 NPIEGRYGSEREEHRICGGVRILSADLENSGEGCT 233
N I+GR+ + EE +C + +L+ +GEG T
Sbjct: 47 NTIQGRFEIKCEEDSMCRWKFLAQVELQFTGEGQT 81
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 122 NSNAQAEKKTLP 87
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 122 NSNAQAEKKTLP 87
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 232 RGDVAPVRPISAAGLQGEEPPVDRI 306
RGD P P A G QGE PV I
Sbjct: 158 RGDKGPSGPRGALGDQGETGPVGEI 182
>Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical
protein T07C12.8 protein.
Length = 965
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 273 TCCGYGSNRRDI 238
T CGYG NRR+I
Sbjct: 345 TLCGYGRNRREI 356
>U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 22 protein.
Length = 579
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 235 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 62
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 232 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 289
Query: 61 HFG 53
H G
Sbjct: 290 HAG 292
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 105 RKENSSRTSRRRLQATLGYPVEHSFLK 25
R +N S +R R+ +G PVE FLK
Sbjct: 746 RLDNYSIETRVRIMFVMGVPVEAGFLK 772
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 105 RKENSSRTSRRRLQATLGYPVEHSFLK 25
R +N S +R R+ +G PVE FLK
Sbjct: 746 RLDNYSIETRVRIMFVMGVPVEAGFLK 772
>AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 555
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 235 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 62
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 208 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 265
Query: 61 HFG 53
H G
Sbjct: 266 HAG 268
>AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 443
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 235 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 62
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 96 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 153
Query: 61 HFG 53
H G
Sbjct: 154 HAG 156
>AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched related
family protein 15 protein.
Length = 840
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 265 RIWVEPA-RHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 146
+IW E ++V+ +P+FS++ E + QM S PY
Sbjct: 519 KIWAEGLIGRIYVNNAPDFSKNPEMVDRMLQMVNELESTPY 559
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,096,712
Number of Sequences: 27780
Number of extensions: 163832
Number of successful extensions: 638
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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