Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1010
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    31   0.21 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   0.85 
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    26   6.0  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 122 SLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSS 229
           SL++ RR    SSKR ++K SD++  S+   PL+ S
Sbjct: 10  SLSIRRRQRRGSSKRISMKESDEESDSSENHPLSES 45


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 548 FEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 697
           F F+ S +V+ +  E    +V+++K+ QPR N    N  IE  +N   DA
Sbjct: 637 FSFETSPTVFQTSPEEDKENVNNIKISQPR-NSLQTNGYIEGMANNVLDA 685


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 258 YGEEVTKDYQRS--YEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPA 404
           + E V+ D   S  +++FA  V G +P+  + + F+    DF+     +PA
Sbjct: 53  FTESVSNDSFSSLPWQIFANSVAGNSPLQNEAWAFLMDNEDFFLPVPMNPA 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,201
Number of Sequences: 5004
Number of extensions: 53009
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)