Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1010
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 30 1.5
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 30 2.0
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 30 2.0
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 6.2
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 8.3
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 521 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVA 688
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A
Sbjct: 499 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKMNKTGHVPINPPDETEKNSA 554
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 521 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 697
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A A
Sbjct: 496 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 554
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 521 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 697
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A A
Sbjct: 521 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 579
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 28 YYPLMLTKFTPFAQRPDYYNLHTEENYERVRF 123
Y +L PFA+ P Y++H E Y V+F
Sbjct: 93 YTGRILIAVNPFAKLPHLYDMHMMEQYRGVQF 124
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 202 HDPKAINFVGNYWQDN-ADCMEKKSQ 276
HDPK + N+W +N AD K Q
Sbjct: 1128 HDPKRAELISNFWAENTADIEANKEQ 1153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,466
Number of Sequences: 37544
Number of extensions: 324401
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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