Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1010
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.8  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.6  
SB_19384| Best HMM Match : Toxin_29 (HMM E-Value=7.4)                  29   4.8  
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           28   6.4  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)                28   8.4  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   8.4  

>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 166 PFGGTERMSSHKCQG-ILLFHSFLRCASCSS 77
           PF  +    SH C+G I   H F RCA CS+
Sbjct: 221 PFCASAFTRSHHCRGHINSVHKFFRCAICSA 251


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 7   YSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYERVRFL 126
           Y P KT    L   K T  A RP Y NL +   Y R R+L
Sbjct: 99  YVPWKTALNALSYLK-TVLANRPSYGNLQSCPKYNRFRYL 137


>SB_19384| Best HMM Match : Toxin_29 (HMM E-Value=7.4)
          Length = 102

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 122 SLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSSATTGKIMQTVWRRSHKRLPTFLRS 301
           +LTL+   +  ++ ++   P      S TR  LT S T   + Q+++       P    +
Sbjct: 3   TLTLLHFGTRQANNKSNTVPCSSDGQSITRVVLTQSITRVVLTQSIFASDTVYYPCSSDT 62

Query: 302 ICAPCARCCAY 334
           +C PC+    Y
Sbjct: 63  VCYPCSSDTVY 73


>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 826

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 169 GPFGGTERMSSHKCQGILLFHSFLRCASC 83
           GP  G +R S H+CQ +L+  + LRC  C
Sbjct: 788 GPTDG-QRPSQHQCQILLMDSAKLRCLCC 815


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 278 RLPTFLRSICAPCARCC 328
           R+P F R +CA  ARCC
Sbjct: 816 RMPEFRRELCAIFARCC 832


>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
          Length = 632

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 10  SPIKTGYYPLMLTKFTPFAQRPDYYNLHTE--ENYERVRFLDTYE 138
           SP+ T   P +  K TP   RP+ Y +     + +E +R LD  E
Sbjct: 118 SPLSTKKNPKVSFKNTPVRHRPERYKIELPQLDTWEEIRCLDEEE 162


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 362 RHESVLVEWHRRST*HTARKYFVRTLVI 279
           ++E V+ EW ++ T   A K++VR L I
Sbjct: 635 KYEKVMEEWRKKMTHFLATKFYVRHLFI 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,814,962
Number of Sequences: 59808
Number of extensions: 392981
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)