Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1010
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane...    28   5.6  
Z92806-8|CAJ43452.1|  307|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL021501-3|CAJ43442.1|  307|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    28   7.4  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical
           protein C43F9.6 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 318 LGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLY--NRIVEYIVEFKQYLKPYT 473
           LG AP    K +F P+   F +   ++   + +Y  +  V Y++ +KQ LK Y+
Sbjct: 146 LGGAP----KVSFDPNPRQFLEDGTKNAMSWNIYEFSTYVNYLIRYKQVLKKYS 195


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 SSKRTTLKPSDKKLISTTRKPLTSSATTGKI 247
           SS   +L  SD    STT +PL +S+T GKI
Sbjct: 67  SSFTESLSNSDTSPASTTTEPLPTSSTPGKI 97


>Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical
           protein T24C2.1 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 167 TTLKPSDKKLISTTRKPLTSSATTGKIMQTVWRRSHKRLPTF 292
           TT  PS   +ISTT  P+TSS+ T K+    +  +H  L TF
Sbjct: 470 TTTMPST--MISTTTTPMTSSSRTDKLPSEHF--NHPELDTF 507


>AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane
           protein RAM-5 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 167 TTLKPSDKKLISTTRKPLTSSATTGKIMQTVWRRSHKRLPTF 292
           TT  PS   +ISTT  P+TSS+ T K+    +  +H  L TF
Sbjct: 470 TTTMPST--MISTTTTPMTSSSRTDKLPSEHF--NHPELDTF 507


>Z92806-8|CAJ43452.1|  307|Caenorhabditis elegans Hypothetical
           protein Y61B8A.4 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 503 LDTIKV-KFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 372
           LD  K+ K V+++  Q LL++ ++FH    +L   RI++  LVK+
Sbjct: 195 LDQWKMAKSVIALDKQSLLDIGNIFHLHQFKLQLVRISREELVKI 239


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 176 KPSDKKLIS---TTRKPLTSSATTGK 244
           KP DKK+ S   TT+KP T++ TT K
Sbjct: 345 KPKDKKVSSTTTTTKKPTTTTTTTPK 370


>AL021501-3|CAJ43442.1|  307|Caenorhabditis elegans Hypothetical
           protein Y61B8A.4 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 503 LDTIKV-KFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 372
           LD  K+ K V+++  Q LL++ ++FH    +L   RI++  LVK+
Sbjct: 195 LDQWKMAKSVIALDKQSLLDIGNIFHLHQFKLQLVRISREELVKI 239


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
           protein Y48G9A.1 protein.
          Length = 1725

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 422 VVEL-IESRITKRSLVKVHCTRHESV 348
           VVEL IE  I+K  LV++H  RH+ +
Sbjct: 145 VVELGIEQSISKEILVRIHVARHDPI 170


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 152 SSSKRTTLKPSDKKLISTTRKPLTSSATT 238
           SS   TT+ P    + +TT KP+T   TT
Sbjct: 217 SSEFTTTMTPESSSVTTTTAKPVTEPITT 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,192
Number of Sequences: 27780
Number of extensions: 299721
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)