Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1010
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23710.1 68414.m02993 expressed protein                             31   0.56 
At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ...    30   1.3  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    29   3.0  
At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   3.9  
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    29   3.9  
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ...    28   5.2  
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu...    27   9.1  

>At1g23710.1 68414.m02993 expressed protein
          Length = 295

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 137 RRHSFSSSKRTTLKPSDKKLISTTR--KPLTSSATTGKIMQTVWRRSHKRLPTFLRSICA 310
           R  S SSS  T  + +DKK+I+  +  K  TS+++  K   T  + +H++L    R++  
Sbjct: 207 RTRSSSSSSSTAAEENDKKVITEKKKGKEKTSTSSETKKKTTTTKSAHEKLYMRNRAMKE 266

Query: 311 PCARCCAYAIRQVHFHA*CNGL 376
                     +QV F    NGL
Sbjct: 267 EVKHRSYLPYKQVGFFTNVNGL 288


>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP4 gi:5059396
           from [Arabidopsis thaliana]; EMBL:AF155817
          Length = 307

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 208 GRGNQFFVRRLQSGPFGGTERMSSHKCQGILLFHSFLRCASCSS 77
           G G +FF   +  G  GG  RM +H+   IL  H  L+C  C+S
Sbjct: 17  GGGGRFFGGGIGGGG-GGDRRMRAHQ-NNILNHHQSLKCPRCNS 58


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 143 HSFSSSKRTTLKPSDKKLISTTRKPL---TSSATTGKIMQTVWRRSHKRLPTFLRSICAP 313
           H+   ++R    PS   L+  +R       SSA   +  + + + S  RL     +I AP
Sbjct: 150 HNSPVNQRVRRSPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAP 209

Query: 314 CARCCAY 334
           CAR C Y
Sbjct: 210 CARICPY 216


>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 590 PLY*STRCCWRRIQSSRRMLSIYR 519
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  QRPDYYNLHTEENYERVRFLDTYE-KTFVQFLQKDHFEAF 183
           Q+P   NLH EE Y+  R +   E  +F++FL+K    AF
Sbjct: 41  QKPICSNLHFEEYYKEQRIVKAQEWDSFMEFLRKPLPAAF 80


>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 507

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 233 TTGKIMQTVWRRSHKRLPTFLRSICAPCARCCAYAIRQV 349
           +TGK M +  +   K++P +LR+    C   C Y  RQ+
Sbjct: 28  STGKAMTS--KPKEKKIPHYLRASTGSCHDLCKYGKRQI 64


>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to Apc1/Tsg24
           protein, the largest subunit of human anaphase-promoting
           complex (APC/C) GI:11967711 from [Homo sapiens]
          Length = 1678

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 161 KRTTLKPSDKKLISTT-RKPLTSSATTGKIMQTVW 262
           K T +K  D++ I T+ R PL +S   GK+  +VW
Sbjct: 222 KLTIMKDYDERTIWTSDRLPLMTSYNKGKMQHSVW 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,387
Number of Sequences: 28952
Number of extensions: 269213
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)