Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1007
         (530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    48   1e-04
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    42   0.007
UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    39   0.063
UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus tropicalis|...    36   0.58 
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    36   0.58 
UniRef50_Q9FGQ6 Cluster: Similarity to APC-binding protein EB1; ...    35   1.0  
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   1.8  
UniRef50_Q04004 Cluster: Phosducin-like protein 1; n=2; Saccharo...    33   3.1  
UniRef50_A2D9Z7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q8WXI7 Cluster: Mucin-16; n=23; cellular organisms|Rep:...    33   5.4  
UniRef50_UPI0000E4A253 Cluster: PREDICTED: similar to Vacuolar p...    32   7.2  
UniRef50_UPI00015559C4 Cluster: PREDICTED: similar to tudor doma...    32   9.5  

>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 48.0 bits (109), Expect = 1e-04
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -2

Query: 157 LLPSLDVVAVSQAPSPESNPDSP 89
           LLPSLDVVAVSQAPSPE NPDSP
Sbjct: 167 LLPSLDVVAVSQAPSPELNPDSP 189


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 42.3 bits (95), Expect = 0.007
 Identities = 27/61 (44%), Positives = 31/61 (50%)
 Frame = -1

Query: 347 LTATILVYXXXXXXXXXXXTRLALQLFLVKILKCTHSDYEAS*ESRIVIFRHYLPCREWV 168
           LTATIL+Y           TRLALQL   K+L   HS+Y+      IVI  HYL   E  
Sbjct: 314 LTATILIYAIGAGITAAAGTRLALQLIFGKVLSSHHSNYKTKIWPYIVISCHYLSYLELA 373

Query: 167 I 165
           I
Sbjct: 374 I 374



 Score = 39.1 bits (87), Expect = 0.063
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -2

Query: 136 VAVSQAPSPESNPDSPLPVTTMVVAETTIES 44
           +A+SQAPSPESN +SPLPV  M+     I+S
Sbjct: 372 LAISQAPSPESNSNSPLPVKAMLGQYPNIKS 402


>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 39.1 bits (87), Expect = 0.063
 Identities = 23/47 (48%), Positives = 25/47 (53%)
 Frame = -1

Query: 389 GAPTARRTNATTSFLTATILVYXXXXXXXXXXXTRLALQLFLVKILK 249
           G P AR  + TTSFLTA  L+Y           TRLALQ  LVK  K
Sbjct: 30  GGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFK 76



 Score = 37.9 bits (84), Expect = 0.14
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = -3

Query: 252 KVYSFRLRGLVRVPYRYFSSLPPVPGVG 169
           KV SF+L+GL RV Y YFSSLPP  G G
Sbjct: 76  KVDSFQLQGLERVLYCYFSSLPPRVGSG 103


>UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus
          tropicalis|Rep: Novel protein - Xenopus tropicalis
          (Western clawed frog) (Silurana tropicalis)
          Length = 118

 Score = 35.9 bits (79), Expect = 0.58
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 29 MSALSTFDGSFCDYHG 76
          MSALSTFDG+FC YHG
Sbjct: 1  MSALSTFDGTFCAYHG 16


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 35.9 bits (79), Expect = 0.58
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 474 RILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 313
           R++   ++F            V+  PR+R  D AA + NY L NR+N+ +  W+
Sbjct: 142 RVMSFQKKFKSPEFAAQYDRPVNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_Q9FGQ6 Cluster: Similarity to APC-binding protein EB1;
           n=13; Magnoliophyta|Rep: Similarity to APC-binding
           protein EB1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 329

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -3

Query: 513 LSPTSTLTEEHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCN 358
           LSP +  +EE R+ +    +R L   L  D++A  ++SPR R +D++  KC+
Sbjct: 270 LSPIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -3

Query: 315 SWNYRGCWHQTCP 277
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19



 Score = 31.9 bits (69), Expect = 9.5
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -2

Query: 184 RAGSG*FARLLPSLDVVAVSQAPSP 110
           +  SG  +RLL  +D+VA+SQAPSP
Sbjct: 48  KVSSGKVSRLLLPVDIVAISQAPSP 72


>UniRef50_Q04004 Cluster: Phosducin-like protein 1; n=2;
           Saccharomyces cerevisiae|Rep: Phosducin-like protein 1 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 230

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 366 KCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPR*NIKVYSFRL---RGLVRVPYRYFS 196
           KC Y      N + RY +  +     QTCP +V + NIKV  F +    GL +V Y  FS
Sbjct: 114 KCQYMNEKLENLAKRYLTTRFIKVNVQTCPFLVNKLNIKVLPFVVGYKNGLEKVRYVGFS 173

Query: 195 SLPPVPGVGNLR 160
            L   P   ++R
Sbjct: 174 KLGNDPNGFDIR 185


>UniRef50_A2D9Z7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 872

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 154 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 20
           +PSL  V++SQ   P+  P +PLP    +++E   E   G  + D
Sbjct: 67  IPSLPPVSISQTIKPQIIPQNPLPTMNHIISEPLDEPASGEEMAD 111


>UniRef50_Q8WXI7 Cluster: Mucin-16; n=23; cellular organisms|Rep:
            Mucin-16 - Homo sapiens (Human)
          Length = 22152

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -2

Query: 220  KSPVSLFFVTT---SRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 62
            ++P  + ++TT       SG F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5614 RTPGDVSWMTTPPVEETSSG-FSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>UniRef50_UPI0000E4A253 Cluster: PREDICTED: similar to Vacuolar
           protein sorting protein 36 (ELL-associated protein of 45
           kDa), partial; n=3; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Vacuolar protein sorting protein
           36 (ELL-associated protein of 45 kDa), partial -
           Strongylocentrotus purpuratus
          Length = 349

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 92  PVTRDNHGSRRNYHRKLIRQTFERCVA 12
           PVTR+ HGS   YH +L +Q  E  +A
Sbjct: 190 PVTRETHGSGLKYHEELAKQLSEALIA 216


>UniRef50_UPI00015559C4 Cluster: PREDICTED: similar to tudor domain
           containing 7, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to tudor domain
           containing 7, partial - Ornithorhynchus anatinus
          Length = 439

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -3

Query: 504 TSTLTEEHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSI 325
           +++LT E+    +++ +R  + R+   +S N+ V P +  TDS +     +L N N   I
Sbjct: 214 SASLTLENSSNTMVV-KRTQQGRMGHMVSKNIPVPPLVIPTDSCSPVLVVKLNNTNEVLI 272

Query: 324 RYWSWNY 304
           RY   NY
Sbjct: 273 RYIGKNY 279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,745,733
Number of Sequences: 1657284
Number of extensions: 10885234
Number of successful extensions: 28631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28610
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)