Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1007
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.57 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   1.3  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   1.7  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   4.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   5.3  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   5.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.0  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 34  CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 138
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 159 RANYPLPAREVVTKNNDT 212
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 333 FSIRYWSWNYRGCWHQTCPPIVPR*NIKVYSFRLR 229
           F   Y  WNY G  +Q  P  +P    KV+   LR
Sbjct: 96  FKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLR 130


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 147 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 49
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 145 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 44
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 459 NRRFLERRLTDDISANVSVSPR-MRCTDSAAHKCNYELFNRNNFSIRYWSWNYR 301
           NR  +  RL     ++ S + R +R    AA KC +E      FSI + S+N++
Sbjct: 44  NRILIAVRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFK 97


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 194 HYLPCREWVICAPA 153
           HY+PC+ W++  P+
Sbjct: 455 HYIPCQSWLVWYPS 468


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 246 YSFRLRGLVRVPYRYFSSLPPVPGVGNL 163
           YS RLR  ++  Y+Y   + P PG+ ++
Sbjct: 271 YSHRLRDSLKEVYQYRRIISPPPGLSSM 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,647
Number of Sequences: 5004
Number of extensions: 41027
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)