Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1007
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.036
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.4  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   1.8  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   3.1  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            28   4.1  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   5.4  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_55493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  27   7.2  
SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)               27   7.2  
SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.2  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -2

Query: 142 DVVAVSQAPSPESNPDSPLPVTTM 71
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -2

Query: 133 AVSQAPSPESNPDSPLPVTTM 71
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1

Query: 253 NILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 390
           +++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 57  HLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +1

Query: 265 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 390
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 132 PFLRLPLRNRTLIPRYP 82
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +1

Query: 277 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 390
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +1

Query: 265 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 390
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 325 YTKIVAVKKLVVAFVRRAVGAP 390
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 325 YTKIVAVKKLVVAFVRRAVGAP 390
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 325 YTKIVAVKKLVVAFVRRAVGAP 390
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 363 CNYELFNRNNFSIRYWSWNYRGCWH 289
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 486 EHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWN 307
           E RD  L  NR+       ++   + +V P +    S + +      +   FSI YW W+
Sbjct: 453 ELRDTYLTENRQLNMYDYRENDGIDCAVWPHLYPYHSWSRRSAATSLDTKTFSIEYWRWH 512

Query: 306 YR 301
           +R
Sbjct: 513 HR 514


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 151 PSLDVVAVSQAPSPESNPDSPLP 83
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 402 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 304
           S R+RCT S + KC     + + F    W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


>SB_55493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 460 EPAFFRTPAHRRYLRKRVSITAD 392
           EPAFFR PA  + L  R ++ +D
Sbjct: 56  EPAFFRVPAFGKELHVRAALNSD 78


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 143 QGRQQARK--LPTPGTGGSDEK*RYGTLTRPRNRN 241
           QGR + RK  L  PG GGSD K R     +   RN
Sbjct: 136 QGRDEVRKAILDIPGEGGSDMKSRLQREVQEARRN 170


>SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)
          Length = 812

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 149 RQQARKLPTPGTGGSDEK*RYGTLTRPRNRNEYTLIF*RGTIGGQ 283
           RQ  R+ P+  TGG+  + R  T++  R + +Y     RG+I  Q
Sbjct: 188 RQDKRQYPSAKTGGNIHQQRQETVSISRGKRQYPSTETRGSIHQQ 232


>SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 268

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 456 RRFLERR-LTDDISANVSVSPR--MRCTDSAAHKCNYELFNRNNFSIRYWS 313
           RRF E R L   I ++    P   M+C  S AHKC     +R +  +R +S
Sbjct: 141 RRFTESRDLARHIRSHTGEKPYQCMKCGKSFAHKCTLVTHDRIHTGVRPYS 191


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 91  GNQGSIPEREPEKRLPHPRKAA 156
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 459 NRRFLERRLTDDISANVSVSPRMRCTD-SAAHKCNYELFNR 340
           N+R+   RLT   S+ +S    + CT    ++K  Y  F R
Sbjct: 215 NQRYKNLRLTSSTSSEISAEDTLMCTSPELSNKTEYPTFAR 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,229
Number of Sequences: 59808
Number of extensions: 358241
Number of successful extensions: 927
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)