Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1007
         (530 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    33   0.83 
AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting pro...    30   5.8  
AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple ...    29   7.7  
AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2...    29   7.7  
AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1...    29   7.7  
AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.     29   7.7  

>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -2

Query: 220  KSPVSLFFVTT---SRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 62
            ++P  + ++TT       SG F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5614 RTPGDVSWMTTPPVEETSSG-FSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 420 SANVSVSPRMRCTDSAAHKCNYELFNRNNF 331
           S  +++ PR++C+ +    CN+EL   +NF
Sbjct: 9   SQGLALLPRLKCSGAIIAHCNFELLGSSNF 38


>AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple
            domains 3 protein.
          Length = 3501

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 179  REWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 72
            R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1260 RAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1297


>AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2
            protein.
          Length = 3667

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 179  REWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 72
            R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1361 RAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1398


>AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1
            protein.
          Length = 3707

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 179  REWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 72
            R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1401 RAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1438


>AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.
          Length = 2977

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 179 REWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 72
           R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 741 RAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 778


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,003,644
Number of Sequences: 237096
Number of extensions: 1703592
Number of successful extensions: 4400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4400
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)