Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1007
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    30   0.90 
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.8  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   6.3  

>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 468 LILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 319
           +I+     + R  ++I +N++V      + SA HK NYEL    +F +RY
Sbjct: 83  IIIEHGCTKGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 460  EPAFFRTPAHRRYLRK 413
            EP+F RTPAH  YL K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 154 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 50
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 171 GNLRACCLPWMW*PFLRLPLR 109
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 336 CCG*KARSCICAPRCRC 386
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 360 NYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPR*NIKVYSFRLRGLVRVPYRYF 199
           N+  FN       +  WN +  W++ CP +     +KV  F+  GL+R     F
Sbjct: 273 NFGKFNIKKVVDFFGFWNIQKTWNKKCPKV-----LKVPQFKSYGLLRTESNKF 321


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIGMST 248
           E   T    +RR + PLPA    + +N+TGLL  ++  +++
Sbjct: 3   ENGATPVAAARR-HRPLPAERATSNSNETGLLINVIRSLTS 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,706
Number of Sequences: 27780
Number of extensions: 250050
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)