Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1006
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 119 LSCREFARLEKHKQRCAGINFYNIDTNKTLSISADRRSNYISS*SI 256
           +S R+   LEK   + AG+   N + N+ + +   +RSNY S  +I
Sbjct: 221 VSSRQVQDLEK---KLAGLAQQNTELNEKIQLFEQKRSNYSSDGNI 263


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -2

Query: 537 FCLKIFSSKKEAALSLGAHEKPIASLTIR*FFNYQISYSPNMLTLNMLL 391
           FCLK+  +KKE    L  H+K + +   + F  Y +S+S ++++ N+ L
Sbjct: 863 FCLKVIRTKKE---ELDGHKK-LVNPNTKVFCLYLVSFSYSIIS-NLFL 906


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,865
Number of Sequences: 5004
Number of extensions: 50679
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)