Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1006
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.      29   2.7  

>Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 535 EIILVMSCRYIANILSTVSTCEINFKPINFRYVHDLK 645
           +I L+   R +A  L +V T EIN +PIN   + D++
Sbjct: 27  QISLISGFRGVARHLKSVLTVEINTEPINLNGLEDVR 63


>Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 535 EIILVMSCRYIANILSTVSTCEINFKPINFRYVHDLK 645
           +I L+   R +A  L +V T EIN +PIN   + D++
Sbjct: 27  QISLISGFRGVARHLKSVLTVEINTEPINLNGLEDVR 63


>AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 535 EIILVMSCRYIANILSTVSTCEINFKPINFRYVHDLK 645
           +I L+   R +A  L +V T EIN +PIN   + D++
Sbjct: 27  QISLISGFRGVARHLKSVLTVEINTEPINLNGLEDVR 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,289
Number of Sequences: 27780
Number of extensions: 270801
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)