Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1006
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 567 NVST*HYQNNFCLKIFSSKK 508
           N+ST  Y+N  CL   SS++
Sbjct: 634 NISTTIYENQNCLDASSSRR 653


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 471 IASLTIR*FFNYQISYSPNMLTLNMLLNYVNSI 373
           +++ TI    NY+ +Y+ N   L   +NY+  I
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLYYNINYIEQI 117


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 549 YQNNFCLKIFSSKKEAALSLGAHEK 475
           YQ  +C K FS K+  ++    H K
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTK 144


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 373 FLHNCIHATAIYFLF 329
           F  NCIH T    LF
Sbjct: 34  FCRNCIHPTVFSVLF 48


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 373 FLHNCIHATAIYFLF 329
           F  NCIH T    LF
Sbjct: 482 FCRNCIHPTVFSVLF 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,197
Number of Sequences: 438
Number of extensions: 3441
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)