Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1005
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    44   4e-04
BC047726-1|AAH47726.1|  273|Homo sapiens OAF homolog (Drosophila...    34   0.60 
AY459296-1|AAR23238.1|  273|Homo sapiens NS5ATP13TP2 protein.          34   0.60 

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +1

Query: 181 MVNYAWSGRSQGKP*WRTVAILTC 252
           MVNYAW+GRSQ K  WR+VA+LTC
Sbjct: 1   MVNYAWAGRSQRKLWWRSVAVLTC 24


>BC047726-1|AAH47726.1|  273|Homo sapiens OAF homolog (Drosophila)
           protein.
          Length = 273

 Score = 33.9 bits (74), Expect = 0.60
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -2

Query: 650 CTLLSGFRLPWPPSC---CH--ERPTPFMVSHERFLGALNYVWFIPQRQFCL 510
           C    G  L W P     CH  +RPTP+         + ++ +++PQRQ CL
Sbjct: 214 CVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKSYSFDFYVPQRQLCL 265


>AY459296-1|AAR23238.1|  273|Homo sapiens NS5ATP13TP2 protein.
          Length = 273

 Score = 33.9 bits (74), Expect = 0.60
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -2

Query: 650 CTLLSGFRLPWPPSC---CH--ERPTPFMVSHERFLGALNYVWFIPQRQFCL 510
           C    G  L W P     CH  +RPTP+         + ++ +++PQRQ CL
Sbjct: 214 CVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKSYSFDFYVPQRQLCL 265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,336,345
Number of Sequences: 237096
Number of extensions: 2606920
Number of successful extensions: 12029
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12029
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)