Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1005
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
 Frame = -3

Query: 478 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNFGRNQLLD 299
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN   +   D
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNESDHN--D 277

Query: 298 GSISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRH----SSPSFGSQHLC 158
           G +       V   D +  S         D DL ++    S+PS  S   C
Sbjct: 278 GRLRYWRTPSVVVSDYSDYSYLDEKLERNDLDLEKYEGISSTPSQASSCSC 328


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 279 PYTQFRRSIARQNRYGPPSGFP 214
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 279 PYTQFRRSIARQNRYGPPSGFP 214
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 279 PYTQFRRSIARQNRYGPPSGFP 214
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 279 PYTQFRRSIARQNRYGPPSGFP 214
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 279 PYTQFRRSIARQNRYGPPSGFP 214
           P+   +  I R    GPP+ FP
Sbjct: 353 PFVSIQEQIPRFRYIGPPTSFP 374


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 286 LSPLYPVPTID 254
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 286 LSPLYPVPTID 254
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,935
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)