Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1005
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.4  
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    29   4.2  
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    28   5.5  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   7.3  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   7.3  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    27   9.6  

>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 499 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 404
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 198 VRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRP 320
           V  + G+ +ME  SD      VG   RG    EP S+W++P
Sbjct: 24  VVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKP 64


>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -3

Query: 358 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRHSSPS 179
           K  +D+   E   G   +    +   P+  +P +D    S       +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 178 FGSQHLCSE 152
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 556 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 657
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 556 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 657
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 292 ISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRHSSPSFGSQHLC 158
           ++L P    P + C S+SLRS IR SP+   TR S     S +LC
Sbjct: 36  LALVPKRYYPILCCVSKSLRSLIR-SPEIHKTR-SLHGKDSLYLC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,811,329
Number of Sequences: 28952
Number of extensions: 374724
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)