Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.3  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   5.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   5.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 134 NFQGPQRVSGHRRKC 90
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 134 NFQGPQRVSGHRRKC 90
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 330 HRPHPLPVQTRHAPVLRANPYS 265
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -1

Query: 147 HPSPEFSRSAESIRTPPQMRCSSRSE-----PYLPSIGFH 43
           HP    S+ + +   PPQ+  + R E     P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 180 YGYEPARHLHVHPSPEFSRSAESIR 106
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 405 LYIFNMTLAKIVLRFGLDPDPRSP 476
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 525 HETKPTDLTARKIRGRPENAGPDP 454
           H  +PTDLT  +I+       P P
Sbjct: 217 HTGEPTDLTPEQIQAAEVKDFPSP 240


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 52  RIPWNSNAQAEKKTLPG 2
           +IPW+ NA+A  K   G
Sbjct: 330 QIPWDKNAEALAKWANG 346


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 122 DLENSGEGCTWRCRAGSYPYPQQVS 196
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 79  PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 114


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 308 SKPDTPRSSEP 276
           SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           PRS+ P+  P   +   +S     LS   S P +PA
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPA 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,388
Number of Sequences: 336
Number of extensions: 3016
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)