Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.49 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.49 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.0  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   2.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   6.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.0  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 314 SGCGRCRVWSMFVRYVRFSE 373
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 498 ARKIRGRPENAGPDPVRNVRRFSRV 424
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 185 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 57
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 377 LTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRSN--LPTSLTYIILSTRGS 204
           +TR N+ + R   +  T   R  +K      S+PIL  +LR+    PTS+ Y+   T   
Sbjct: 56  ITRLNQDDVRLFEKAKTVADR--TKDVAYSFSDPILSTQLRTPPPQPTSIRYLYFGTYRI 113

Query: 203 SPW 195
            PW
Sbjct: 114 KPW 116


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 351 TNIDQTRHRPHPLPVQTRHAPV 286
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 240 FPYLHYSID*RLFTLETCCGYGYEPARHL 154
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 365 NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPA 186
           + H+ RTST     R R+   P+TP S  P   P + +  P  L        G+S   P 
Sbjct: 44  SNHDRRTSTDTTHSRHRY---PETPPSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPT 100

Query: 185 ADMGTNR 165
           +   +N+
Sbjct: 101 SPHPSNQ 107


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 333 RHRPHPLPVQTRHAPV-LRANPYSEVTVQ-FADF-PYLHYSID*RLFTLETCCGYGYEPA 163
           RH     P++T   P+ +   P  E+ VQ F +  P+L      +L  +  CC YG  P 
Sbjct: 478 RHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL------KLLNIRACCAYGGAPI 531

Query: 162 R 160
           +
Sbjct: 532 K 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,188
Number of Sequences: 5004
Number of extensions: 49878
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)