Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.50 
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   4.6  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   4.6  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   6.1  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   6.1  
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584...    27   8.1  
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548...    27   8.1  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -1

Query: 351 TNIDQTRH------RPHPLPVQTRHAPVLRANPYSEVTVQFA 244
           T IDQ  H      + H +PVQ  H+PVL+ NP   +  + A
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNPSPRIIPEAA 365


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 341 TRPGTGRIRFPSKPDTPRSSEPILIPKLRSN 249
           TRP TG+   P K D  RS   + I KLR +
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLRES 138


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 230 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 105
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 353 ARTSTRPGTGRIRFPSKPDTPRSSE 279
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 183 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 52
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


>12_02_1045 +
           25656495-25656566,25657788-25657884,25658327-25658419,
           25658524-25658644,25659115-25659181,25659261-25659302,
           25659455-25659583,25659674-25659733,25659887-25659929,
           25660198-25660280,25660496-25661002,25661088-25661588
          Length = 604

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -1

Query: 471 NAGPDPVRNVRRFSRVSY*IYTVFEA-ALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTRH 295
           + GPD V  V   +R    + T FEA A+    N ++ +    I     +    PVQ  H
Sbjct: 94  STGPDEV--VMMMTRTGSKVITKFEASAVKVTPNQMRSSACKMIRLIVQQTRTYPVQEEH 151

Query: 294 APVLRANPYSEVTVQFADFPYLHYSID 214
           A  ++ + Y + T +  + P+  Y ++
Sbjct: 152 AIEMKLSFYEDTTPEDYEPPFPKYCVN 178


>03_02_0079 +
           5485090-5485238,5486066-5486137,5486764-5486840,
           5486946-5486989,5487583-5487639,5487640-5487686,
           5488010-5488184,5489501-5489662,5489845-5489883
          Length = 273

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 293 PRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRP 189
           P  S  +L+PK  + LP SL+ +   T+G S + P
Sbjct: 30  PVRSLLLLLPKFSTGLPVSLSSVFDVTKGKSNYGP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,992
Number of Sequences: 37544
Number of extensions: 372561
Number of successful extensions: 1401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)