Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    25   1.3  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    24   3.1  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    24   3.1  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    24   3.1  
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    23   5.4  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   5.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.1  
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    23   7.1  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       23   9.4  
DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.       23   9.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  

>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 570 ELTVERRSYRIVPIAHETKPTDLTARKIRGRP 475
           E  V+     I+P A  +KPTD T + I  +P
Sbjct: 29  ENVVQAEQLPILPTADSSKPTDDTVKAIAPQP 60


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 275 LALRTGACRVWTGSGCGRCRVWSM 346
           +++  G   V  G+ C  C VWSM
Sbjct: 5   ISVHVGQAGVQIGNPCWDCTVWSM 28


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 339 QTRHRPHPLPVQTRHAPVLRANPYSEVT 256
           Q  H PH    Q +H P   + P++ V+
Sbjct: 72  QLHHSPHQYHQQVQHQPQPPSTPFANVS 99


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 339 QTRHRPHPLPVQTRHAPVLRANPYSEVT 256
           Q  H PH    Q +H P   + P++ V+
Sbjct: 73  QLHHSPHQYHQQVQHQPQPPSTPFANVS 100


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine
           dehydrogenase protein.
          Length = 1325

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 254 TVTSE*GLALRTGACRVWTGSGCGR 328
           T T E  L +    CR   G+GCG+
Sbjct: 149 TFTKEFALRMGDKCCRNGNGNGCGQ 173


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 563 PLNGGRTESCRSRTKRNR 510
           P +GGR  SCRS   R R
Sbjct: 262 PRSGGRWPSCRSPPARRR 279


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 530  SRTKRNRPTLRLG--RSAEGR 474
            SRT R+R TLRL   RS+ GR
Sbjct: 991  SRTLRSRETLRLAQPRSSAGR 1011


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 144 PSPEFSRSAESIRTPPQMRCSSRSEPY 64
           P P  + + E    PP++ C+   E Y
Sbjct: 39  PEPSTTEATEEESPPPKIECTDPREVY 65


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
 Frame = +1

Query: 454 WIRTRVLRPSADLPSRKVGRFR-----FVRDRHDSVRPP 555
           W+R R L P ADL   +    R     F+ D   +  PP
Sbjct: 346 WVRLRSLGPCADLQLEQFAVLRYTTGPFINDAFPTGAPP 384


>DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.
          Length = 595

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 356 NARTSTRPGTGR--IRFPSKPDTPRSSEPILIPKLRSNLPTSLTYIILSTRGSSPW--RP 189
           N  TSTRPG     +   S+       +  ++P+      T    I  +++   P   RP
Sbjct: 410 NRPTSTRPGNNLNDVLIFSRFQNETMEQTTVVPEAADT--TEPLTIETTSQSFVPLTNRP 467

Query: 188 AADMGTNRRDISTYIP 141
           +  +G  +RD+S  +P
Sbjct: 468 SGRVGRTKRDVSYKVP 483


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 313 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 411
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 41  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 73


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 313 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 411
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 41  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 73


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,391
Number of Sequences: 2352
Number of extensions: 12262
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54665910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)