Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    31   0.78 
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    29   2.4  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   3.1  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   3.1  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   3.1  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   3.1  
AC006618-1|AAK68250.1|  762|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical ...    28   5.5  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = -2

Query: 335 PGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDI 156
           P    ++  SKP TP  + P+L+P++   LP   + +   T  S P         +   +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQV--ELPAKTSSVSQKTTVSPPVEKVTPPPQHPPQL 381

Query: 155 STYIPHLNFQGPQ 117
           S  +P LN  GPQ
Sbjct: 382 SLQVP-LN--GPQ 391


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 347 TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTSLT 231
           TST P T       KP +P ++E    P L SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical protein
            T12G3.2a protein.
          Length = 928

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -2

Query: 347  TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPAADMGTN 168
            T   P   ++R P+    PRSS+  L+     +LP S T + +S    SP +P + + + 
Sbjct: 845  TMISPPPAKVRPPAVDTYPRSSQFELVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSP 901

Query: 167  RRDISTYIPHLNFQGPQRVSGHRRK 93
             +   T IPH+   G   +  H ++
Sbjct: 902  NQ---TTIPHMYNNGIPMIYEHHQQ 923


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -2

Query: 341 TRPGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTSLTYIILSTRGSSPWRPAADMGT 171
           +RP +GR R P+ P+ P+  E   +P++  N+P + T I L    ++ W P A   T
Sbjct: 157 SRP-SGRRRLPATPNLPKHGE---LPQI-FNIPHANTLISLQLCVNNNWSPRAPGST 208


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 360  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTV 253
            T +++ID T H PHP+ VQ   T+   V+   P   V+V
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSV 942


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 LTR*NEHNARTSTRPGTGRIRFPSKPDT 294
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 LTR*NEHNARTSTRPGTGRIRFPSKPDT 294
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 LTR*NEHNARTSTRPGTGRIRFPSKPDT 294
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 LTR*NEHNARTSTRPGTGRIRFPSKPDT 294
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AC006618-1|AAK68250.1|  762|Caenorhabditis elegans Hypothetical
           protein C45B2.6 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 311 PSKPDTPRSSEPILIPKLRSNLPTSL 234
           P  PD PRS E IL   +++NLP  L
Sbjct: 237 PETPDYPRSFEKILEYSIKNNLPHCL 262


>AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical
           protein Y37E11B.3 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 302 PDTPRSSEPILIPKLRSNLPTSLTYIIL-STRGSSPWRPAA 183
           PDTP +S+P+L  K  S +   L   I  S R SSP R AA
Sbjct: 8   PDTPTTSQPLLSNKQTSFVVDDLEERIRESARISSPKRAAA 48


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 111 IRTPPQMRCSSRSEPYLPSIGFHGT 37
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 132 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 31
           FS S E+  T  Q R +  S P  YLPSIG + T T
Sbjct: 11  FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,796
Number of Sequences: 27780
Number of extensions: 289202
Number of successful extensions: 897
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)