Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1004
(576 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 31 0.011
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 23 2.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 23 2.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 23 2.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.9
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 5.0
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 5.0
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 6.6
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 6.6
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 6.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 6.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 6.6
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 8.7
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 8.7
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 30.7 bits (66), Expect = 0.011
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 275 ILIPKLRSNLPTSLTYIILST-RGSSP 198
+ +P+ R+ +P +LTYI L T RG SP
Sbjct: 81 VTVPRWRNGIPATLTYISLDTNRGGSP 107
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 537 VPIAHETKPTDLTARKIRGRPENAGPDPVRNVRR 436
VPI TKP AR +G N G + V V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 537 VPIAHETKPTDLTARKIRGRPENAGPDPVRNVRR 436
VPI TKP AR +G N G + V V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 537 VPIAHETKPTDLTARKIRGRPENAGPDPVRNVRR 436
VPI TKP AR +G N G + V V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 313 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 411
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 313 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 411
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.8 bits (44), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 306 QTRHAPVLRANPYSEVTVQFADFP 235
+ RH L + Y+EV V FA P
Sbjct: 772 RARHHDDLYSQSYAEVGVLFASMP 795
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.8 bits (44), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 561 VERRSYRIVPIAHETKPTDLTARKIRGRPEN 469
VE + Y+ V I+ T+P+ T + P N
Sbjct: 183 VEEQRYKQVEISQMTEPSSSTKSYVLEGPRN 213
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 495 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 316
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 315 LPV 307
+PV
Sbjct: 115 VPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 495 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 316
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 315 LPV 307
+PV
Sbjct: 115 VPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 495 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 316
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 315 LPV 307
+PV
Sbjct: 115 VPV 117
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 75 SEPYLPSIGFHGTRTLRQKRKLFPD 1
SE P+ HG R RQ+ + D
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALAD 496
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 495 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 316
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 290 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 347
Query: 315 LPV 307
+PV
Sbjct: 348 VPV 350
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.0 bits (42), Expect = 8.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 495 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 316
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 315 LPV 307
+P+
Sbjct: 115 VPI 117
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 324 PHPLPVQTRHAPVLRANPYSEV 259
P PLP A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,984
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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