Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1004
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    29   2.9  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   2.9  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   2.9  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   3.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   3.9  
At1g07220.1 68414.m00768 expressed protein                             28   3.9  
At2g32510.1 68415.m03972 protein kinase family protein contains ...    28   5.1  
At5g03870.1 68418.m00360 glutaredoxin family protein contains Pf...    27   6.8  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   6.8  
At5g46790.1 68418.m05764 expressed protein similar to unknown pr...    27   9.0  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    27   9.0  

>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = -2

Query: 554 GGRTESCRSR-TKRNRPTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI 378
           GG+ +SC     + NRP  R         T+    +E  DD        +  + P++   
Sbjct: 603 GGKKKSCSQMDAQSNRPLKRAKDMEHVASTKYVSPTEKLDD-------EVDIVEPNFSLG 655

Query: 377 LTR*NEHNARTSTRPGTGRIR-FPSKPDTPRSSEPILIPKLRSNLPTSLTYI 225
           LT+  E N   S  P  G+ + FPSK    RSS  I    ++SN   ++T I
Sbjct: 656 LTQ--EINDNRSRLPPRGKKKTFPSKVSVLRSSNRIRDRPIQSNSIENMTSI 705


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 306 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 464
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 92  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 193
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 467 RVRIQSET*DDFRECHIKYIQFLRPH 390
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 117 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 19
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 231 LHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 64
           L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++CS  S PY
Sbjct: 37  LFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQCSYFSCPY 91


>At2g32510.1 68415.m03972 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 372

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 308 SKPDTPRSSEPILIPKLRSNLPTSLT 231
           +KPD     EP+L+P L SN PTS+T
Sbjct: 261 TKPDI----EPVLVPGLISNSPTSVT 282


>At5g03870.1 68418.m00360 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 384

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 570 ELTVERRSYRIV--PIAHETKPTDLTARKIRGRPENAGP 460
           EL+ E+   ++V  P+ HE++ T+ T R +   PE   P
Sbjct: 195 ELSQEKEQIKMVISPVVHESRKTEKTERILEKFPEKCPP 233


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 159 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 70
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


>At5g46790.1 68418.m05764 expressed protein similar to unknown
           protein (pir||T05073)
          Length = 221

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 576 SSELTVERRSYRIVPIAHETKPTDLT 499
           SS +  E  S RI  + H+T P+DLT
Sbjct: 8   SSPVNEEENSQRISTLHHQTMPSDLT 33


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 347 TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRSNLPTS 237
           T+   GT + RFP K   P S+E +    L ++LP S
Sbjct: 216 TTVIDGTRQSRFPEKSAFPGSAEVVSFSILNTDLPFS 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,067
Number of Sequences: 28952
Number of extensions: 278765
Number of successful extensions: 940
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)