Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    73   5e-12
UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    48   2e-04
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    43   0.008
UniRef50_A3BVR1 Cluster: Putative uncharacterized protein; n=3; ...    37   0.41 
UniRef50_P91019 Cluster: Putative uncharacterized protein; n=3; ...    37   0.54 
UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus tropicalis|...    36   0.94 
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    36   1.2  
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   2.9  
UniRef50_Q86U42 Cluster: Polyadenylate-binding protein 2 (Poly(A...    34   3.8  
UniRef50_Q0QMQ1 Cluster: Polyketide synthase type I; n=1; Strept...    33   5.0  
UniRef50_A4XB73 Cluster: Major facilitator superfamily MFS_1; n=...    33   6.6  
UniRef50_A2D9Z7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q4USS9 Cluster: Penicillin acylase II; n=7; Xanthomonas...    33   8.8  
UniRef50_A0XYI9 Cluster: Putative lipoprotein; n=1; Alteromonada...    33   8.8  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 42/74 (56%), Positives = 46/74 (62%)
 Frame = -2

Query: 477 GAPTARRTNATTSFLTATILVYXXXXXXXXXXXTRLALQLFLVKIFKVYSFRLRGLVRVP 298
           G P AR  + TTSFLTA  L+Y           TRLALQ  LVK FKV SF+L+GL RV 
Sbjct: 30  GGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVL 89

Query: 297 YRYFSSLPPVPGVG 256
           Y YFSSLPP  G G
Sbjct: 90  YCYFSSLPPRVGSG 103


>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 245 LLPSLDVVAVSQAPSPESNPDSP 177
           LLPSLDVVAVSQAPSPE NPDSP
Sbjct: 167 LLPSLDVVAVSQAPSPELNPDSP 189


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 30/72 (41%), Positives = 37/72 (51%)
 Frame = -3

Query: 347 KYLKCTHSDYEAS*ESRIVIFRHYLPCREWVFARLLPSLDVVAVSQAPSPESNPDSPLPV 168
           K L   HS+Y+      IVI  HYL   E            +A+SQAPSPESN +SPLPV
Sbjct: 343 KVLSSHHSNYKTKIWPYIVISCHYLSYLE------------LAISQAPSPESNSNSPLPV 390

Query: 167 TTMVVAETTIES 132
             M+     I+S
Sbjct: 391 KAMLGQYPNIKS 402


>UniRef50_A3BVR1 Cluster: Putative uncharacterized protein; n=3;
           Magnoliophyta|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 234

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = -3

Query: 245 LLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYP 66
           LL  L+      +P+P S+  SP P  +   +   I    G H +  SPVL  A+  S P
Sbjct: 58  LLRGLNRPLARPSPAPSSSSPSPTPSASTSSSAKWIPVLDGAHARSPSPVLTPALRPSSP 117

Query: 65  DSSKLTTSDARPSVD 21
              +L + D  P  D
Sbjct: 118 PRHRLASEDRAPKKD 132


>UniRef50_P91019 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 1724

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 188 GSIPEREPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRP 316
           G +P   P+ R+P P  A GA  P+   G + ++ RYGT   P
Sbjct: 816 GPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRYGTPAPP 858


>UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus
           tropicalis|Rep: Novel protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 118

 Score = 35.9 bits (79), Expect = 0.94
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 117 MSALSTFDGSFCDYHG 164
           MSALSTFDG+FC YHG
Sbjct: 1   MSALSTFDGTFCAYHG 16


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 535 FRTPAHR-RYSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 401
           F++P    +Y   V+  PR+R  D AA + NY L NR+N+ +  W+
Sbjct: 150 FKSPEFAAQYDRPVNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 403 SWNYRGCWHQTCP 365
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_Q86U42 Cluster: Polyadenylate-binding protein 2
           (Poly(A)-binding protein 2) (Poly(A)- binding protein
           II) (PABII) (Polyadenylate-binding nuclear protein 1)
           (Nuclear poly(A)-binding protein 1); n=58;
           Coelomata|Rep: Polyadenylate-binding protein 2
           (Poly(A)-binding protein 2) (Poly(A)- binding protein
           II) (PABII) (Polyadenylate-binding nuclear protein 1)
           (Nuclear poly(A)-binding protein 1) - Homo sapiens
           (Human)
          Length = 306

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 PEREPEKRLPHPRKAAGAQIPTPGTG--GSDEK 289
           PE EPE+  P PR   GA  P PG+G  GS E+
Sbjct: 66  PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEE 98


>UniRef50_Q0QMQ1 Cluster: Polyketide synthase type I; n=1;
            Streptomyces aculeolatus|Rep: Polyketide synthase type I
            - Streptomyces aculeolatus
          Length = 4308

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 403  SWNYRGCWHQTCPPIVPR*NI*SVLIPITRPRKSPVSLFFVTTSRAGS 260
            SW Y   WH   PP  PR  +    + +T P  SP +        AG+
Sbjct: 3664 SWRYTVTWHPHTPPAAPRAVLTGTWLLLTPPEASPPAALVAALEAAGA 3711


>UniRef50_A4XB73 Cluster: Major facilitator superfamily MFS_1; n=2;
           Salinispora|Rep: Major facilitator superfamily MFS_1 -
           Salinispora tropica CNB-440
          Length = 426

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 442 RSCICAPRCRCTA--SAVILTRLRNIVGEPAF*KTPVQY 552
           RSC C P C CTA  S  +   LR + GEPA  +  + Y
Sbjct: 196 RSCCCHPGCTCTARWSTELGAGLRYLAGEPALRRALLGY 234


>UniRef50_A2D9Z7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 872

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -3

Query: 242 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYP- 66
           +PSL  V++SQ   P+  P +PLP    +++E   E   G  + D   V+D +  ++ P 
Sbjct: 67  IPSLPPVSISQTIKPQIIPQNPLPTMNHIISEPLDEPASGEEMAD-DFVIDSSKSENKPT 125

Query: 65  DSSKLTTSDA 36
           D  +   +DA
Sbjct: 126 DEVEENQNDA 135


>UniRef50_Q4USS9 Cluster: Penicillin acylase II; n=7;
           Xanthomonas|Rep: Penicillin acylase II - Xanthomonas
           campestris pv. campestris (strain 8004)
          Length = 828

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 215 KRLPHPRKAAGAQIPTPGT 271
           +RLPHP  A GA+ PTPG+
Sbjct: 262 RRLPHPSTAPGAEAPTPGS 280


>UniRef50_A0XYI9 Cluster: Putative lipoprotein; n=1; Alteromonadales
           bacterium TW-7|Rep: Putative lipoprotein -
           Alteromonadales bacterium TW-7
          Length = 263

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -3

Query: 272 PCREWVFARLLPSLDVVAVSQAPSPESNP-DSPLPVTTMVVAET-TIES**GRHLKDASP 99
           P + W+F+ +  S      S    P+SN  +SP P+T   + +   I      H      
Sbjct: 7   PKQFWLFSLIFLSACGSGSSNTKVPQSNTSESPTPITQNNIEDNYNIIIYGNSHSSQLGR 66

Query: 98  VLDHAICKSYPDSSKLTTS 42
           +++H I   YPD S  TT+
Sbjct: 67  IIEHIIENQYPDKSVQTTT 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,266,111
Number of Sequences: 1657284
Number of extensions: 14717335
Number of successful extensions: 39819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 37803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39792
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)