Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.84 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.84 
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.9  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   5.9  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   7.9  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   7.9  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 167 SRVTGNQGSIPEREPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRPRNR 325
           SR++     IP+R  + R   PR+  G    + G G  D +  YG+  RPR R
Sbjct: 5   SRLSSGSSRIPKRHRDYRDEEPRRERG----SGGIGREDPRGHYGS-ERPRRR 52


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 122 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 226
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 296 IVIFRHYLPCREWVFARLLPSLDVVAV 216
           IV+F H LPC    F + L + D + +
Sbjct: 267 IVVFLHLLPCERTSFKKFLKTFDFIGL 293


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 235 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 137
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 233 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 132
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 303 VPYRYFSSLPPVPGVGICAPAAFLGCG 223
           + +RYF  LP V        AAF GCG
Sbjct: 243 IAFRYFPWLPHVGDCSGSLFAAFFGCG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,229
Number of Sequences: 5004
Number of extensions: 57374
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)