Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    30   1.5  
12_02_1274 - 27480012-27480383                                         29   2.6  
05_01_0146 - 953957-956278,956468-956786,957185-957213                 29   3.5  
12_01_0861 + 8153108-8153266,8154633-8155136                           28   8.1  
08_01_1002 + 10171942-10172859,10173369-10173452                       28   8.1  
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    28   8.1  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.1  

>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -3

Query: 293 VIFRHYLPCREWVFARLLPSLDVVAVSQAPSPESNPDSPLP 171
           VI  H  P R +VFA L  SL     + APSP +  DS +P
Sbjct: 62  VIPPHPRPSRRFVFAHLNRSLVSSCDAPAPSPAAASDSSIP 102


>12_02_1274 - 27480012-27480383
          Length = 123

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 279 LPPVPGVGICAPAAFLGCGSRFSGSLSGI 193
           LPPVPG+G      F G G    G + GI
Sbjct: 61  LPPVPGMGGGGVGGFAGMGGPLGGVIGGI 89


>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 155 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRPRNRN 328
           LP  SR   N+  I    P     + R +  + I  P T G+  +   GT + PR+RN
Sbjct: 5   LPSKSRSGPNESPISRGRPSTPSSNHRPSTPSSIHRPSTPGATRRSIGGTPSTPRSRN 62


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 269 CREWVFARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 147
           C+E    RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 105 CQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 29  RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 193
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 194 IPEREPEK 217
           + +RE  K
Sbjct: 302 VRDRENRK 309


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 197 PEREPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRPRNRNEYTLNILTRNN 361
           P +  E  +P P K      P PGT  SD+     + T+P   NE T  IL   N
Sbjct: 631 PAKSDENSVPRPDKFDEDSGPRPGT--SDD----SSATKPAEHNESTAEILFNPN 679


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 430 RNNFSIRYWSWNYRGC 383
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,439,723
Number of Sequences: 37544
Number of extensions: 428648
Number of successful extensions: 1255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)