Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1001
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.7
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.7
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 8.3
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 8.3
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -3
Query: 290 IFRHYLPCREWVFARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 159
+F H L + + + DVVAVSQAPSPESNP+SP PV TM
Sbjct: 85 VFVHRLHNKHATKPKPIKYWDVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 221 AVSQAPSPESNPDSPLPVTTM 159
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 302 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 478
T + R ++++ R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +2
Query: 353 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 478
R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 220 PFLRLPLRNRTLIPRYP 170
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +2
Query: 365 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 478
RASL Y K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 353 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 478
R ASL Y K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -3
Query: 359 CSSLKYLKCTHSDYEAS*ESRIVIFRHYLPCREWVFARLLPSLDVVAVSQAPSPESNPD 183
CS L YL+C +R+++F H L + + P AV+ P+ + P+
Sbjct: 528 CSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRAPPRSKRAVTGNPAMMNRPN 586
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 413 YTKIVAVKKLVVAFVRRAVGAP 478
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 413 YTKIVAVKKLVVAFVRRAVGAP 478
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 413 YTKIVAVKKLVVAFVRRAVGAP 478
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 197 PEREPEKRLPHPRKAAGAQIPTPGT 271
P+ PE P RKAA + P PGT
Sbjct: 167 PQTNPEDSSPGNRKAANRETPPPGT 191
>SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 520 HRRYSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIR 410
H + +N S++P + TD HK EL N+N IR
Sbjct: 11 HSKTISNRSLNPSITYTDMHRHKSELELKNKNAGKIR 47
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 451 CNYELFNRNNFSIRYWSWNYRGCWH 377
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 197 PEREPEKRLPHPRKAAGAQIPTPGTG 274
P P + +PHPR +IP PG G
Sbjct: 297 PGYPPPQYMPHPRMRPPTRIPPPGMG 322
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 239 PSLDVVAVSQAPSPESNPDSPLP 171
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 392
S R+RCT S + KC + + F W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 273 PVPGVGICAPAAFLGCGSRFSGSLS 199
P PG+G+ P++ CGS SLS
Sbjct: 277 PPPGIGVSCPSSAFVCGSEHVHSLS 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,075,025
Number of Sequences: 59808
Number of extensions: 477741
Number of successful extensions: 1617
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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