Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010939-1|AAH10939.1|  306|Homo sapiens poly(A) binding protein...    34   0.55 
AF026029-1|AAC39596.1|  306|Homo sapiens poly(A) binding protein...    34   0.55 
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    32   2.2  
AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting pro...    30   9.0  

>BC010939-1|AAH10939.1|  306|Homo sapiens poly(A) binding protein,
           nuclear 1 protein.
          Length = 306

 Score = 33.9 bits (74), Expect = 0.55
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 PEREPEKRLPHPRKAAGAQIPTPGTG--GSDEK 289
           PE EPE+  P PR   GA  P PG+G  GS E+
Sbjct: 66  PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEE 98


>AF026029-1|AAC39596.1|  306|Homo sapiens poly(A) binding protein II
           protein.
          Length = 306

 Score = 33.9 bits (74), Expect = 0.55
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 PEREPEKRLPHPRKAAGAQIPTPGTG--GSDEK 289
           PE EPE+  P PR   GA  P PG+G  GS E+
Sbjct: 66  PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEE 98


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 254  FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 150
            F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5634 FSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 508 SANVSVSPRMRCTDSAAHKCNYELFNRNNF 419
           S  +++ PR++C+ +    CN+EL   +NF
Sbjct: 9   SQGLALLPRLKCSGAIIAHCNFELLGSSNF 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,794,778
Number of Sequences: 237096
Number of extensions: 2322770
Number of successful extensions: 6013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6013
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)