Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    37   0.016
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    30   1.8  
U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    28   7.3  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   9.6  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    27   9.6  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   9.6  
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    27   9.6  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 188 GSIPEREPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRP 316
           G +P   P+ R+P P  A GA  P+   G + ++ RYGT   P
Sbjct: 816 GPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRYGTPAPP 858


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 290 IFRHYLPCREWVFARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 138
           I R  +  +  V    +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 543 ILREVVAPKATVLKTTVPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 203 REPEKRLPHPRKAAGAQIPTPGTGGSDEK*RYGTLTRPRNR 325
           +E +KR   P+    A I T  TGG D+    GT+  P++R
Sbjct: 249 KELKKRGRKPKMDPTAPISTTSTGGGDKGKLSGTIPVPKSR 289


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 424 CCG*KARSCICAPRCRC 474
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 547  EPAFFRTPAHRRYSANVSVS 488
            EP+F RTPAH  Y A +  S
Sbjct: 1451 EPSFLRTPAHMTYLAKLMYS 1470


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 594  PTSTLTEEHRDRILILNRRFLERRLTDDIPQTCQYHRGCGAPTAR 460
            PT+ + E  RD  +++   F+E    D +      HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 594  PTSTLTEEHRDRILILNRRFLERRLTDDIPQTCQYHRGCGAPTAR 460
            PT+ + E  RD  +++   F+E    D +      HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 594  PTSTLTEEHRDRILILNRRFLERRLTDDIPQTCQYHRGCGAPTAR 460
            PT+ + E  RD  +++   F+E    D +      HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 594 PTSTLTEEHRDRILILNRRFLERRLTDDIPQTCQYHRGCGAPTAR 460
           PT+ + E  RD  +++   F+E    D +      HR CG P  R
Sbjct: 402 PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,139
Number of Sequences: 27780
Number of extensions: 346369
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)