Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1001
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.39 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 529 TPAHRRYSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRG 386
           T A  +Y+ +VS  P      S      Y  F+  +  +++ SW Y G
Sbjct: 136 TKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNG 183


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 41  PKSLILMNLDNFCRSHGQVPAT 106
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 392
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 392
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 392
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 392
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 490 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 392
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 294 RYFSSLPPVPGVGICAP 244
           RYF  L  +  +G+CAP
Sbjct: 2   RYFIILLALVALGVCAP 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,635
Number of Sequences: 438
Number of extensions: 4535
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)