Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0999
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 1.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 1.8
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 3.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 4.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 4.3
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 24 5.6
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 24 5.6
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 24 7.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 7.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 24 7.5
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 23 9.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 23 9.8
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 9.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 23 9.8
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 172 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRYCGALRVPNPISL 44
A GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNP-PSARRLPSASSV 412
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 1.8
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 328 SRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSPWRPAADMGTNRR 149
S P SKP P ++S +N P S+P +ST S P A+ +++
Sbjct: 373 SSPALTSENLSSKPSPLFPPPPPRVKSLATNKPVSMP---VSTEQSDPSVAASSSSSSQL 429
Query: 148 DI 143
D+
Sbjct: 430 DV 431
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 328 SRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSPWRPAAD 167
+RP + F KP P + + I+I S S P LS+R S P D
Sbjct: 206 ARPQISDLSFFRKPSLPSALQNIVIEKNASQRSVSEPLHNLSSRYSHFTSPHID 259
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.6 bits (51), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -2
Query: 229 TSLPYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRRYCGAL 68
TS Y I ST G S W P++ + + Y+ F P S R Y G L
Sbjct: 671 TSEGYAI-STSGFSLWNPSSKSWVSMEKLGFYMSGYLFDIPGFNSTQRIYSGNL 723
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 4.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 341 RTNIVQTRHRPHPLPVQTRHAPVLRANPYPKL 246
RT+ V T P P T AP + + P PK+
Sbjct: 900 RTSSVSTLPPPPPTASMTASAPAIASPPPPKV 931
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 209 SID*RLFTLETCCGYGYEPARHL 141
S+D R+F LE+ GY EP L
Sbjct: 165 SLDKRIFKLESKIGYADEPLSEL 187
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 331 SSRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPY 215
SS P TG S RSS + + N+PT+ Y
Sbjct: 144 SSHPSTGSFEVKSSSSKSRSSMSLFHVVFVLNVPTATVY 182
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 272 LRANPYPKLRIQFADFPSLHYSID*RLFTLET 177
L+ YP++ +QF + PS + + LET
Sbjct: 636 LQKKGYPEIALQFVEDPSTRFELALECGNLET 667
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 140 HVHPSPEFSRSAESIRTPPLLRCSSRSEPYLPS 42
+ P P +S PP+L S RS LP+
Sbjct: 139 YCEPLPNHLTKTKSCSIPPILNSSDRSPLSLPT 171
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 173 CGYGYEPARHLHVHPSPEFSRSAESIRTPP 84
C Y E RH H P E + + I T P
Sbjct: 1217 CDYRVEVPRHSHRPPLIELQKMVDDIPTLP 1246
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 23 EFHGILQKGDRVRNAKST 76
E+HG+ +G VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 208 LSTRGSSPWRPAA-DMGTNRRDISTYIPHLNFQGPQR 101
L+ + W+ + D GT+R D+S P NF QR
Sbjct: 116 LAFTNHTDWKASKHDDGTHRVDLSQRKPANNFMATQR 152
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 259 LIRSYGSNLPTSLPYI 212
LI+SY LP++LP I
Sbjct: 323 LIKSYSKQLPSNLPQI 338
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 23.4 bits (48), Expect = 9.8
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -1
Query: 173 CGYGYEPARHLHVHPSPEFSRSAESIRTPPLLRCSSRSEPYLPSVGF 33
C Y LH P P F SI + L CS S P F
Sbjct: 85 CRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNF 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,816
Number of Sequences: 5004
Number of extensions: 29012
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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