Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0999
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 34 0.034
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 0.72
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 29 0.72
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 1.7
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 27 3.9
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 26 6.7
12_02_0970 + 24939345-24939416,24940689-24941054 26 6.7
07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353... 26 6.7
06_01_1013 - 7931756-7935109 26 6.7
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 26 6.7
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 26 6.7
01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555 26 6.7
01_01_0012 + 71903-72935,73468-73981,74619-76008 26 6.7
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 26 8.9
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 33.9 bits (74), Expect = 0.034
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 320 RHRPHPLPVQTRHAPVLRANPYPKL 246
+++ H +PVQ H+PVL+ NP P++
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNPSPRI 360
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 0.72
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 314 RPHPLPVQTRHAPVLRANPYP 252
RPH P+ T H P+ A P+P
Sbjct: 398 RPHRFPLLTEHPPIWTAQPHP 418
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 170 GYGYEPARHLHVHPSPEFSRSAES-IRTPPLLRCSSRSEPYLP 45
G+ P+ H P P+ S R PPL R S RSE P
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFP 68
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 217 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 92
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 316 TGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYII 209
T R+ F P PRS +P++ + N + P +I
Sbjct: 578 TSRLAFAGNPPQPRSEDPVMYQHQQQNSYSMQPSLI 613
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 272 GPGRVGFGREADAAGAGSGR 331
G GR GFGR +GSGR
Sbjct: 579 GSGRSGFGRSGGFGDSGSGR 598
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 204 DRIM*GREVGKLDP*LRI--RIGSEDRGVSGLDGKRMRPV 317
+ ++ G G +DP + + R+ SED GLDG+R RPV
Sbjct: 61 EAVVGGAVAGVVDPDIVLGGRVRSED---DGLDGQRCRPV 97
>07_01_0468 +
3537669-3537890,3539003-3539130,3539398-3539621,
3539660-3540062,3540398-3540473
Length = 350
Score = 26.2 bits (55), Expect = 6.7
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 305 PLPVQTRH-APVLRANPYPKLRIQFADFPSLHYSID*RLFTLETCCGYGYEPARHLHVHP 129
PLP H A V R P P R + + +L + +FT+ A +L VHP
Sbjct: 39 PLPPPAFHGAAVQRRRPRPPPRDEATNNRTLLFVFQVCMFTMMVI---NLSIAIYLTVHP 95
Query: 128 SPEFSRSAE 102
SPE S + E
Sbjct: 96 SPEESIADE 104
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 164 GYEPARHLHVHPSPEFSRSAESIRTPP 84
G+EP R + +HP+P+ A + + P
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSKP 905
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 104 ESIRTPPLLRCSSRSEPYLPSVGFHGTRTLRQK 6
+S R P R ++PYLPS G R LR+K
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREK 237
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 340 ARTSSRPGTGRIRFPSKPDTPRSSEPILIRSYGS 239
A + PG FPSK +T SE L SY S
Sbjct: 546 ATMGTAPGLVSSSFPSKTETSSGSEYFLEHSYSS 579
>01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555
Length = 294
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 262 ILIRSYGSNLPTSLP 218
+L+ S+GSNLP SLP
Sbjct: 14 VLLTSHGSNLPMSLP 28
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 131 PSPEFSRSAESIRTPPLLRCSSRSEPYLPSV 39
PSP RS R+P R S RS Y P V
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 62 NAKSTAIAAVSGYSLRTLKIQVRDVRGDVAPVRTHI 169
+A S A++GYS TL++ DV G V TH+
Sbjct: 17 SAVSLVDGALAGYSAPTLRLLDIDVPGARLAVATHV 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,880
Number of Sequences: 37544
Number of extensions: 231504
Number of successful extensions: 979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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