Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0999
(341 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC129999-1|AAI30000.1| 216|Homo sapiens LOC730112 protein protein. 29 5.0
U12259-1|AAA80574.1| 283|Homo sapiens paired box homeotic prote... 28 6.6
U02368-1|AAC50053.1| 836|Homo sapiens PAX3 protein-forkhead tra... 28 6.6
U02309-1|AAA03628.1| 332|Homo sapiens PAX-3 protein. 28 6.6
U02308-1|AAA03627.1| 689|Homo sapiens protein ( Human PAX-3-FKH... 28 6.6
BC114363-1|AAI14364.1| 483|Homo sapiens paired box 3 protein. 28 6.6
BC101302-1|AAI01303.1| 483|Homo sapiens paired box 3 protein. 28 6.6
BC101301-1|AAI01302.1| 484|Homo sapiens paired box 3 protein. 28 6.6
BC101300-1|AAI01301.1| 483|Homo sapiens paired box 3 protein. 28 6.6
BC101299-1|AAI01300.1| 483|Homo sapiens paired box 3 protein. 28 6.6
AY251280-1|AAP13873.1| 407|Homo sapiens paired box 3 splice var... 28 6.6
AY251279-1|AAP13872.1| 403|Homo sapiens paired box 3 splice var... 28 6.6
BC017900-1|AAH17900.1| 103|Homo sapiens mitochondrial ribosomal... 28 8.7
BC015966-1|AAH15966.1| 103|Homo sapiens mitochondrial ribosomal... 28 8.7
AF271777-1|AAG44788.1| 103|Homo sapiens DC47 protein. 28 8.7
>BC129999-1|AAI30000.1| 216|Homo sapiens LOC730112 protein protein.
Length = 216
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 142 STYIPHLNFQGPQRVSGHRRYCGALR 65
ST+IP LN Q P + G+ +C LR
Sbjct: 5 STFIPGLNPQNPHYIPGYTGHCPLLR 30
>U12259-1|AAA80574.1| 283|Homo sapiens paired box homeotic protein
protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 131 TVHRPQPLPPSTVHQSTIPSNP 152
>U02368-1|AAC50053.1| 836|Homo sapiens PAX3 protein-forkhead
transcription factor fusion protein.
Length = 836
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNP 348
>U02309-1|AAA03628.1| 332|Homo sapiens PAX-3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 180 TVHRPQPLPPSTVHQSTIPSNP 201
>U02308-1|AAA03627.1| 689|Homo sapiens protein ( Human PAX-3-FKHR
gene fusion mRNA, partial cds. ).
Length = 689
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 180 TVHRPQPLPPSTVHQSTIPSNP 201
>BC114363-1|AAI14364.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNP 347
>BC101302-1|AAI01303.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNP 347
>BC101301-1|AAI01302.1| 484|Homo sapiens paired box 3 protein.
Length = 484
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNP 348
>BC101300-1|AAI01301.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNP 347
>BC101299-1|AAI01300.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNP 347
>AY251280-1|AAP13873.1| 407|Homo sapiens paired box 3 splice
variant PAX3H protein.
Length = 407
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNP 348
>AY251279-1|AAP13872.1| 403|Homo sapiens paired box 3 splice
variant PAX3G protein.
Length = 403
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHAPVLRANP 258
T HRP PLP T H + +NP
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNP 348
>BC017900-1|AAH17900.1| 103|Homo sapiens mitochondrial ribosomal
protein S36 protein.
Length = 103
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 325 RPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGS 191
+P T IRFP + D P+ + +RS G LP+ I ++GS
Sbjct: 17 KPHTPLIRFPDRRDNPKPNVSEALRSAG--LPSHSSVISQHSKGS 59
>BC015966-1|AAH15966.1| 103|Homo sapiens mitochondrial ribosomal
protein S36 protein.
Length = 103
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 325 RPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGS 191
+P T IRFP + D P+ + +RS G LP+ I ++GS
Sbjct: 17 KPHTPLIRFPDRRDNPKPNVSEALRSAG--LPSHSSVISQHSKGS 59
>AF271777-1|AAG44788.1| 103|Homo sapiens DC47 protein.
Length = 103
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 325 RPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGS 191
+P T IRFP + D P+ + +RS G LP+ I ++GS
Sbjct: 17 KPHTPLIRFPDRRDNPKPNVSEALRSAG--LPSHSSVISQHSKGS 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,771,481
Number of Sequences: 237096
Number of extensions: 1198995
Number of successful extensions: 3460
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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