Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0999
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 31 0.22
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 28 2.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 2.7
AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical ... 27 2.7
U51997-4|AAG24068.1| 115|Caenorhabditis elegans Hypothetical pr... 27 3.5
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 27 4.7
AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical ... 27 4.7
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 4.7
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 4.7
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 4.7
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 26 6.1
Z81097-13|CAD56591.1| 112|Caenorhabditis elegans Hypothetical p... 26 6.1
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 26 6.1
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 26 6.1
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 26 8.1
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 26 8.1
AC024759-7|AAP13762.1| 483|Caenorhabditis elegans Hypothetical ... 26 8.1
AC006679-14|AAK84462.2| 421|Caenorhabditis elegans Hypothetical... 26 8.1
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical protein
T12G3.2a protein.
Length = 928
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = -2
Query: 334 TSSRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSPWRPAADMGTN 155
T P ++R P+ PRSS+ L+RS +LP S + +S SP +P + + +
Sbjct: 845 TMISPPPAKVRPPAVDTYPRSSQFELVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSP 901
Query: 154 RRDISTYIPHLNFQGPQRVSGHRR 83
+ T IPH+ G + H +
Sbjct: 902 NQ---TTIPHMYNNGIPMIYEHHQ 922
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 298 PSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSP-WRPAADMGTNRRDISTYIPHL 122
P+ PD P S + I R YG+N P + IL+ ++P P AD + YI +L
Sbjct: 189 PTDPDDPLSRQNIRDRYYGTNDPVAEK--ILNRAAAAPTLSPPADTTIT----TLYIGNL 242
Query: 121 NFQGPQRVS 95
G Q+V+
Sbjct: 243 GPSGAQQVT 251
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 323 TRHRPHPLPVQTRHA-PVLRANPYPKLRIQ 237
T RPHP+ VQ R A R P P RIQ
Sbjct: 1986 TYQRPHPIKVQVRPATKPYRPRPSPAPRIQ 2015
>AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical
protein C45B2.6 protein.
Length = 762
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 298 PSKPDTPRSSEPILIRSYGSNLPTSL 221
P PD PRS E IL S +NLP L
Sbjct: 237 PETPDYPRSFEKILEYSIKNNLPHCL 262
>U51997-4|AAG24068.1| 115|Caenorhabditis elegans Hypothetical
protein F19G12.3 protein.
Length = 115
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 311 PHPLPVQTRHAPVLRANPYPKLRIQFADFPSLHY 210
PHP RH P L +P+P F F S+ +
Sbjct: 81 PHPRHSTFRHTPPLYISPHPHTPATFRHFFSIFF 114
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical protein
C25F6.3 protein.
Length = 1059
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 316 TGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTR 197
T F S+PDT S P + G LP PY+ L +
Sbjct: 913 TENYHFASRPDTQVSRVPTVEDVIGKALPRIGPYVTLDNQ 952
>AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical
protein Y37E11B.3 protein.
Length = 157
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 289 PDTPRSSEPILIRSYGSNLPTSLPYIIL-STRGSSPWRPAA 170
PDTP +S+P+L S + L I S R SSP R AA
Sbjct: 8 PDTPTTSQPLLSNKQTSFVVDDLEERIRESARISSPKRAAA 48
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 94 RILSADLENSGEGCTWRCRAGSYPYPQQVS 183
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 94 RILSADLENSGEGCTWRCRAGSYPYPQQVS 183
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 94 RILSADLENSGEGCTWRCRAGSYPYPQQVS 183
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 273 PQSQSLSEVTDPICRLPFPTL 211
P+ Q+ S++ P+C+LP TL
Sbjct: 908 PEKQNCSQLIAPVCKLPNETL 928
>Z81097-13|CAD56591.1| 112|Caenorhabditis elegans Hypothetical
protein K07A1.9c protein.
Length = 112
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 286 RVWTGSGCGRCRVWTMFV 339
R++ +GCG ++WT+FV
Sbjct: 95 RLFRATGCGLEKIWTLFV 112
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 273 PQSQSLSEVTDPICRLPFPTL 211
P+ Q+ S++ P+C+LP TL
Sbjct: 908 PEKQNCSQLIAPVCKLPNETL 928
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 77 RCSSRSEPYLPSVGFHGT 24
+ SS +P+LP+VGF GT
Sbjct: 306 KASSLYDPHLPTVGFDGT 323
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 298 PSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSPW 182
P P PR ++PI + Y + TSL + S++ P+
Sbjct: 258 PVGPMAPRYTDPITVYDYNDDDDTSLSDLSNSSKTKKPY 296
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 334 TSSRPGTGRIRFPSKPDTPRSSEPI 260
+SS +R PS DTP SSEP+
Sbjct: 36 SSSSSKRKNLRKPSTDDTPSSSEPL 60
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 298 PSKPDTPRSSEPILIRSYGSNLPTSLPYIILSTRGSSPW 182
P P PR ++PI + Y + TSL + S++ P+
Sbjct: 258 PVGPMAPRYTDPITVYDYNDDDDTSLSDLSNSSKTKKPY 296
>AC024759-7|AAP13762.1| 483|Caenorhabditis elegans Hypothetical
protein Y37E11AR.7 protein.
Length = 483
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 135 YVEMSRRFVPISAAGLQGEEPLVDRI 212
Y M R FVP+S+ E + DRI
Sbjct: 121 YAMMGRMFVPLSSMHFDASESISDRI 146
>AC006679-14|AAK84462.2| 421|Caenorhabditis elegans Hypothetical
protein R13A5.11 protein.
Length = 421
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 293 QTRHAPVLRANPYPKLRIQFADFPSLHYSI 204
Q H P + A + RI F DF HY +
Sbjct: 87 QMAHGPEMTAQNRTQERIDFVDFLDRHYQV 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,623
Number of Sequences: 27780
Number of extensions: 168684
Number of successful extensions: 575
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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