Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   4.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   6.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   8.1  

>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 40  HWSFATNICAIIGGVFTVAGILM 108
           HW+ A  +C +I G+  +AG ++
Sbjct: 309 HWAHANVLCYLIFGILCIAGFVV 331


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 40  HWSFATNICAIIGGVFTVAGILM 108
           HW+ A  +C +I G+  +AG ++
Sbjct: 309 HWAHANVLCYLIFGILCIAGFVV 331


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 511  KLTNLISLNEQLLYINICIYNLNLRHGSNDFHKI 612
            KL   + ++ QL ++ +C+YN     G   F  I
Sbjct: 1217 KLLRALKISHQLYFMPLCVYNFEFYDGGLMFQAI 1250


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 468 LTDQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD 304
           L  Q +L+ +  Y  ++++ P T   +N G+ +S  F   Q+ LF+  +   +YD
Sbjct: 218 LIHQHILVNQRVYAEDVIE-PKTFHYKN-GISISMKFDKDQKKLFINDVSTTKYD 270


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 484 NSDLFSYRSKNANRKI*LYSQYNENSSHNNI 392
           N D+ +  S+N +RK  + +Q N+N  H N+
Sbjct: 799 NFDIGTTNSQNEDRKKKIAAQKNKNPVHGNV 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,426
Number of Sequences: 5004
Number of extensions: 55955
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)