Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888...    40   0.002
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928...    39   0.005
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828...    38   0.010
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374...    36   0.032
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           28   6.4  
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427...    28   6.4  

>07_03_0651 +
           20287661-20287701,20288034-20288124,20288737-20288831,
           20289433-20289523,20290066-20290250,20290590-20290647,
           20290812-20290852,20290935-20291009,20292298-20292354,
           20292480-20292546,20292754-20292900,20292986-20293210,
           20293332-20293493,20293570-20293647,20293735-20293812
          Length = 496

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAIIGGVFTVAGIL
Sbjct: 458 FITNVCAIIGGVFTVAGIL 476


>03_02_0828 -
           11592080-11592171,11592288-11592354,11592748-11592837,
           11592914-11592967,11593109-11593169,11593252-11593319,
           11593513-11593596,11594257-11594349,11594513-11594593,
           11594665-11594793,11595193-11595273,11595401-11595484,
           11596816-11596842,11597027-11597094,11597481-11597619
          Length = 405

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TNICAI+GG+FTVAGI+
Sbjct: 366 FLTNICAIVGGIFTVAGII 384


>04_04_0097 -
           22782031-22782122,22782504-22782570,22782769-22782861,
           22782981-22783034,22783163-22783214,22783346-22783413,
           22783532-22783711,22783843-22783935,22784585-22784665,
           22785011-22785091,22785204-22785331,22786502-22786643
          Length = 376

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAI+GGVFTV+GI+
Sbjct: 337 FLTNVCAIVGGVFTVSGII 355


>05_05_0301 +
           23936126-23936267,23937101-23937174,23937338-23937421,
           23937502-23937582,23938304-23938384,23938503-23938595,
           23939094-23939270,23939838-23939927,23940859-23940925,
           23941218-23941309
          Length = 326

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           + TN+CAI+GGVFTV+GI+
Sbjct: 287 YLTNLCAIVGGVFTVSGII 305



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 3   SPLMVKSTEKEGPLVICYKHLCYNWRSVYCCRHF-DALLYHSINAFENKLLLGK 161
           SP+ V  TE+   L+    +LC     V+      D+ +YH   A + K+ LGK
Sbjct: 271 SPIKVIFTEENSSLLHYLTNLCAIVGGVFTVSGIIDSFIYHGQKALKKKMELGK 324


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  YKHLCYNWRSVYCCRHFDAL-LYHSINAFENKLLLGKTG*FIITVHKVFKNILKSSISHF 230
           Y  L  +W + +    F    L+H+ + F+N+ LLG  G       KV+K +L +S  H 
Sbjct: 318 YAELHEDWEAEFGPHRFSYKDLFHATDGFKNRNLLGLGG-----FGKVYKGVLPTSKLHV 372

Query: 231 A 233
           A
Sbjct: 373 A 373


>03_06_0204 +
           32341756-32341843,32341943-32342025,32342690-32342765,
           32342876-32342943,32343001-32343045,32343308-32343392,
           32344270-32344385,32344497-32344580,32345394-32345540,
           32345845-32345956,32346027-32346146,32346338-32346411
          Length = 365

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F T +CA++GG F + G+L
Sbjct: 326 FLTRLCAVLGGTFAMTGML 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,231
Number of Sequences: 37544
Number of extensions: 271817
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)