Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)                 29   3.7  
SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)            28   8.6  
SB_26205| Best HMM Match : Interferon (HMM E-Value=3.4)                28   8.6  

>SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)
          Length = 342

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 441 RFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD 304
           ++ Y +  M     +I     +    + RIK+RHLFL+ +GR + D
Sbjct: 256 KYRYCYEEMNASCNSIARCPRLFQCSLKRIKERHLFLRHVGRLKED 301


>SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)
          Length = 321

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 103 LMLYCITQLMHLKTNYC 153
           + L C+T+L+H++T YC
Sbjct: 158 IALKCVTRLLHVRTGYC 174


>SB_26205| Best HMM Match : Interferon (HMM E-Value=3.4)
          Length = 464

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 36  GPLVICYKHLCYNWRSVY 89
           GP + CY+H+CY   S+Y
Sbjct: 319 GPDLFCYRHICYLGYSLY 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,744
Number of Sequences: 59808
Number of extensions: 367898
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)