Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical p...    50   2e-06
AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical ...    38   0.009
U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF125442-12|AAD12797.1|  260|Caenorhabditis elegans Hypothetical...    29   2.5  
Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical
           protein C50F4.12 protein.
          Length = 439

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = -1

Query: 471 FLTDQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD--PK 298
           F+ D +++ + + Y+ ++MKI + TILE+  +L   +  IK RH FL+ LGRA Y    K
Sbjct: 324 FMMDSKLVSKTYKYVRDVMKINNETILEHPFILRCSLSVIKSRHDFLKRLGRANYQLAEK 383

Query: 297 KVNYVPIKALVE 262
           K + + I  + +
Sbjct: 384 KESKIDISEVTD 395


>AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical
           protein Y102A11A.6 protein.
          Length = 286

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 13/27 (48%), Positives = 23/27 (85%)
 Frame = +1

Query: 25  QKKKVHWSFATNICAIIGGVFTVAGIL 105
           ++++  ++F T+ICA++GG FTVAGI+
Sbjct: 240 EQRQSFYAFLTSICAVVGGTFTVAGII 266


>U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical
           protein K02G10.3 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +3

Query: 72  NWRSVYCCRHFDALLYHSINAFENKLLLGKTG*FIITVHKVFKNILKSSIS 224
           +++    C H  + + HS+ +F   +  G T   ++TV +  + I+K+ ++
Sbjct: 224 DYKKTELCNHPHSCVSHSVESFAKNMTFGLTASSVLTVIRNVRTIIKNPLN 274


>AF125442-12|AAD12797.1|  260|Caenorhabditis elegans Hypothetical
           protein H04M03.12 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 587 TVQTIFIKFSIQEISEAINRSSYDLFSENVVY 682
           T +  FIKF IQEIS+  +++ + L+ +N+++
Sbjct: 118 TYEMSFIKFIIQEISKLQHQTHFFLYKQNLLF 149


>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 46  SFATNICAIIGGVFTVAGIL 105
           SF  ++CAI+GGVF +A ++
Sbjct: 340 SFLVSLCAIVGGVFAMAQLV 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,814
Number of Sequences: 27780
Number of extensions: 307749
Number of successful extensions: 695
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)