Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   3.8  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 430 YSQYNENSSHNNIRECW 380
           Y+ YN N+++NN ++ +
Sbjct: 94  YNNYNNNNNYNNYKKLY 110


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 42  MDLLFLWILPLVVI 1
           +D LFLWI  L V+
Sbjct: 513 LDRLFLWIFTLAVV 526


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 42  MDLLFLWILPLVVI 1
           +D LFLWI  L V+
Sbjct: 518 LDRLFLWIFTLAVL 531


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 42  MDLLFLWILPLVVI 1
           +D LFLWI  L V+
Sbjct: 518 LDRLFLWIFTLAVL 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,005
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)