Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0998
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27080.1 68417.m03893 thioredoxin family protein contains Pfa...    40   0.002
At1g50950.1 68414.m05728 thioredoxin-related contains weak hit t...    40   0.002
At3g20560.1 68416.m02603 thioredoxin family protein contains Pfa...    40   0.002
At1g36050.1 68414.m04479 expressed protein                             38   0.009
At1g22200.1 68414.m02776 expressed protein                             37   0.015
At2g40790.1 68415.m05032 thioredoxin family protein contains Pfa...    27   9.3  

>At4g27080.1 68417.m03893 thioredoxin family protein contains Pfam
           PF00085: Thioredoxin
          Length = 480

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAIIGGVFTVAGIL
Sbjct: 442 FITNVCAIIGGVFTVAGIL 460


>At1g50950.1 68414.m05728 thioredoxin-related contains weak hit to
           Pfam PF00085: Thioredoxin; contains 2 predicted
           transmembrane domains
          Length = 484

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAIIGGVFTVAGIL
Sbjct: 446 FITNVCAIIGGVFTVAGIL 464


>At3g20560.1 68416.m02603 thioredoxin family protein contains Pfam
           profile PF00085: Thioredoxin
          Length = 483

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAIIGGVFTVAGIL
Sbjct: 445 FITNLCAIIGGVFTVAGIL 463


>At1g36050.1 68414.m04479 expressed protein
          Length = 386

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAI+GGVFTV+GI+
Sbjct: 347 FLTNVCAIVGGVFTVSGII 365


>At1g22200.1 68414.m02776 expressed protein
          Length = 386

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +1

Query: 49  FATNICAIIGGVFTVAGIL 105
           F TN+CAI+GG+FTV+GI+
Sbjct: 347 FLTNVCAIVGGIFTVSGIV 365


>At2g40790.1 68415.m05032 thioredoxin family protein contains Pfam
           profile: PF00085 thioredoxin
          Length = 154

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 302 GSYCARPNDCKKRCLCFILKTLLNKTPAFS 391
           G++C R   CKK C C       NKT A S
Sbjct: 2   GNHCTRIPCCKKVCSCICCCNRRNKTQARS 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,277
Number of Sequences: 28952
Number of extensions: 256298
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)